1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.9G474100.1

Seita.9G474100.1


Description : E3 ubiquitin ligase


Gene families : OG_42_0000112 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G474100.1
Cluster HCAA Clusters: Cluster_203

Target Alias Description ECC score Gene Family Method Actions
416356 No alias plant U-box 24 0.02 Orthogroups_2024-Update
426053 No alias plant U-box 24 0.02 Orthogroups_2024-Update
A4A49_38562 No alias u-box domain-containing protein 27 0.03 Orthogroups_2024-Update
Bradi5g09720 No alias plant U-box 22 0.04 Orthogroups_2024-Update
Bradi5g09777 No alias CYS, MET, PRO, and GLY protein 2 0.04 Orthogroups_2024-Update
Bradi5g27660 No alias CYS, MET, PRO, and GLY protein 2 0.03 Orthogroups_2024-Update
GRMZM2G041141 No alias plant U-box 26 0.03 Orthogroups_2024-Update
GRMZM2G055052 No alias CYS, MET, PRO, and GLY protein 1 0.03 Orthogroups_2024-Update
GRMZM2G071484 No alias plant U-box 22 0.04 Orthogroups_2024-Update
GRMZM2G151204 No alias CYS, MET, PRO, and GLY protein 1 0.03 Orthogroups_2024-Update
GRMZM5G855994 No alias ARM repeat superfamily protein 0.04 Orthogroups_2024-Update
Glyma.07G106000 No alias ARM repeat superfamily protein 0.02 Orthogroups_2024-Update
Glyma.10G081900 No alias plant U-box 23 0.03 Orthogroups_2024-Update
HORVU4Hr1G064070.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
HORVU6Hr1G077120.1 No alias E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Kfl00376_0010 kfl00376_0010_v1.... (at2g28830 : 87.8) PLANT U-BOX 12 (PUB12); FUNCTIONS IN:... 0.03 Orthogroups_2024-Update
LOC_Os02g33590 No alias U-box domain-containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g34410 No alias U-box domain-containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g13740 No alias immediate-early fungal elicitor protein CMPG1, putative,... 0.03 Orthogroups_2024-Update
LOC_Os04g34030 No alias U-box domain-containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g35680 No alias U-box domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g30330 No alias U-box domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g03440 No alias avr9/Cf-9 rapidly elicited protein 74, putative, expressed 0.02 Orthogroups_2024-Update
MA_6335g0010 No alias "(at5g64660 : 281.0) ""CYS, MET, PRO, and GLY protein... 0.04 Orthogroups_2024-Update
Mp7g11000.1 No alias U-box domain-containing protein 25 OS=Arabidopsis... 0.04 Orthogroups_2024-Update
Mp7g11020.1 No alias E3 ubiquitin ligase (PUB) 0.02 Orthogroups_2024-Update
PSME_00022617-RA No alias (at3g52450 : 247.0) Encodes a cytoplasmically localized... 0.02 Orthogroups_2024-Update
PSME_00043995-RA No alias (at1g49780 : 227.0) plant U-box 26 (PUB26); FUNCTIONS... 0.04 Orthogroups_2024-Update
PSME_00046041-RA No alias "(at5g64660 : 307.0) ""CYS, MET, PRO, and GLY protein... 0.03 Orthogroups_2024-Update
PSME_00048709-RA No alias (at2g35930 : 183.0) Encodes a cytoplasmically localized... 0.02 Orthogroups_2024-Update
PSME_00049378-RA No alias (at3g19380 : 185.0) plant U-box 25 (PUB25); FUNCTIONS... 0.02 Orthogroups_2024-Update
PSME_00056516-RA No alias (at3g19380 : 420.0) plant U-box 25 (PUB25); FUNCTIONS... 0.05 Orthogroups_2024-Update
PSME_00056761-RA No alias (at3g19380 : 247.0) plant U-box 25 (PUB25); FUNCTIONS... 0.04 Orthogroups_2024-Update
Potri.002G070500 No alias plant U-box 29 0.04 Orthogroups_2024-Update
Potri.007G110600 No alias ARM repeat superfamily protein 0.03 Orthogroups_2024-Update
Potri.009G016100 No alias plant U-box 24 0.04 Orthogroups_2024-Update
Potri.017G135000 No alias ARM repeat superfamily protein 0.04 Orthogroups_2024-Update
Sobic.001G441100.1 No alias E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sobic.003G367000.1 No alias E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sobic.004G169200.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.004G169900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.004G245100.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.010G102000.1 No alias E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Solyc01g005160 No alias Avr9/Cf-9 rapidly elicited protein 1 0.03 Orthogroups_2024-Update
Solyc01g009330 No alias U-box domain-containing family protein (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Solyc04g008100 No alias U-box domain-containing protein (AHRD V3.3 *** A0A0A0RAL4_9ROSI) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA 16Dec
BP GO:0016567 protein ubiquitination IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Predicted GO
InterPro domains Description Start Stop
IPR003613 Ubox_domain 29 100
No external refs found!