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  5. Seita.9G494800.1

Seita.9G494800.1


Description : E3 ubiquitin ligase


Gene families : OG_42_0002515 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002515_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G494800.1
Cluster HCAA Clusters: Cluster_205

Target Alias Description ECC score Gene Family Method Actions
Brara.G02865.1 No alias E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.G03183.1 No alias E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
GRMZM2G113295 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Glyma.08G241700 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.19G027300 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
Pp1s104_126V6 No alias ring zinc finger 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000782 telomere cap complex IEP Predicted GO
CC GO:0000783 nuclear telomere cap complex IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
CC GO:1990879 CST complex IEP Predicted GO
InterPro domains Description Start Stop
IPR027370 Znf-RING_LisH 46 79
No external refs found!