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  5. Seita.9G503800.1

Seita.9G503800.1


Description : deubiquitinase


Gene families : OG_42_0000597 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000597_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G503800.1
Cluster HCAA Clusters: Cluster_250

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G073979 No alias PPPDE putative thiol peptidase family protein 0.03 Orthogroups_2024-Update
Glyma.17G249300 No alias PPPDE putative thiol peptidase family protein 0.04 Orthogroups_2024-Update
HORVU0Hr1G009550.3 No alias deubiquitinase 0.05 Orthogroups_2024-Update
Sobic.006G168400.1 No alias deubiquitinase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008233 peptidase activity IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR008580 PPPDE_dom 43 177
No external refs found!