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Description : component *(uS2) of small ribosomal-subunit (SSU) proteome
Gene families : OG_42_0001668 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001668_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria italica: Seita.9G517100.1 | |
| Cluster | HCAA Clusters: Cluster_85 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 36118 | No alias | 40s ribosomal protein SA | 0.17 | Orthogroups_2024-Update | |
| At3g04770 | No alias | 40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3] | 0.04 | Orthogroups_2024-Update | |
| Bradi1g20880 | No alias | 40s ribosomal protein SA B | 0.2 | Orthogroups_2024-Update | |
| Bradi1g23780 | No alias | 40s ribosomal protein SA B | 0.2 | Orthogroups_2024-Update | |
| Bradi1g60310 | No alias | 40s ribosomal protein SA B | 0.19 | Orthogroups_2024-Update | |
| Bradi1g72480 | No alias | 40s ribosomal protein SA B | 0.25 | Orthogroups_2024-Update | |
| Brara.B02024.1 | No alias | component *(uS2) of small ribosomal-subunit (SSU) proteome | 0.25 | Orthogroups_2024-Update | |
| Brara.D01465.1 | No alias | component *(uS2) of small ribosomal-subunit (SSU) proteome | 0.25 | Orthogroups_2024-Update | |
| Brara.G02358.1 | No alias | component *(uS2) of small ribosomal-subunit (SSU) proteome | 0.31 | Orthogroups_2024-Update | |
| Brara.G03124.1 | No alias | component *(uS2) of small ribosomal-subunit (SSU) proteome | 0.33 | Orthogroups_2024-Update | |
| Cre10.g432800 | No alias | 40s ribosomal protein SA B | 0.04 | Orthogroups_2024-Update | |
| GRMZM2G092719 | No alias | 40s ribosomal protein SA B | 0.08 | Orthogroups_2024-Update | |
| GRMZM2G099657 | No alias | 40s ribosomal protein SA B | 0.04 | Orthogroups_2024-Update | |
| GRMZM2G126821 | No alias | 40s ribosomal protein SA B | 0.17 | Orthogroups_2024-Update | |
| GRMZM2G145308 | No alias | 40s ribosomal protein SA B | 0.09 | Orthogroups_2024-Update | |
| GRMZM2G159237 | No alias | 40s ribosomal protein SA B | 0.13 | Orthogroups_2024-Update | |
| Glyma.07G043800 | No alias | 40s ribosomal protein SA B | 0.16 | Orthogroups_2024-Update | |
| Glyma.08G159800 | No alias | 40s ribosomal protein SA B | 0.18 | Orthogroups_2024-Update | |
| Glyma.15G267100 | No alias | 40s ribosomal protein SA B | 0.11 | Orthogroups_2024-Update | |
| Glyma.16G012200 | No alias | 40s ribosomal protein SA B | 0.15 | Orthogroups_2024-Update | |
| HORVU2Hr1G030880.1 | No alias | component *(uS2) of small ribosomal-subunit (SSU) proteome | 0.13 | Orthogroups_2024-Update | |
| HORVU4Hr1G077240.1 | No alias | component *(uS2) of small ribosomal-subunit (SSU) proteome | 0.09 | Orthogroups_2024-Update | |
| Mp2g26290.1 | No alias | component RPSa of SSU proteome | 0.07 | Orthogroups_2024-Update | |
| Potri.001G164000 | No alias | 40s ribosomal protein SA | 0.06 | Orthogroups_2024-Update | |
| Potri.003G071200 | No alias | 40s ribosomal protein SA B | 0.13 | Orthogroups_2024-Update | |
| Potri.012G117600 | No alias | 40s ribosomal protein SA B | 0.1 | Orthogroups_2024-Update | |
| Potri.015G112900 | No alias | 40s ribosomal protein SA | 0.05 | Orthogroups_2024-Update | |
| Pp1s173_16V6 | No alias | 40s ribosomal protein | 0.04 | Orthogroups_2024-Update | |
| Pp1s48_103V6 | No alias | 40s ribosomal protein sa | 0.16 | Orthogroups_2024-Update | |
| Sobic.002G374900.1 | No alias | component *(uS2) of small ribosomal-subunit (SSU) proteome | 0.35 | Orthogroups_2024-Update | |
| Sobic.002G375100.1 | No alias | component *(uS2) of small ribosomal-subunit (SSU) proteome | 0.33 | Orthogroups_2024-Update | |
| Sobic.005G229300.1 | No alias | component *(uS2) of small ribosomal-subunit (SSU) proteome | 0.04 | Orthogroups_2024-Update | |
| Solyc03g019780 | No alias | 40S ribosomal protein SA (AHRD V3.3 *** K4BEV0_SOLLC) | 0.16 | Orthogroups_2024-Update | |
| Solyc06g072120 | No alias | 40S ribosomal protein SA (AHRD V3.3 *** K4C8T4_SOLLC) | 0.21 | Orthogroups_2024-Update | |
| Sopen03g029850 | No alias | Ribosomal protein S2 | 0.29 | Orthogroups_2024-Update | |
| Sopen06g028410 | No alias | Ribosomal protein S2 | 0.19 | Orthogroups_2024-Update | |
| evm.model.contig_4456.25 | No alias | (o22518|rssa_soybn : 282.0) 40S ribosomal protein SA... | 0.24 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEA | 16Dec |
| CC | GO:0005840 | ribosome | IEA | 16Dec |
| BP | GO:0006412 | translation | IEA | 16Dec |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Predicted GO |
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
| BP | GO:0006414 | translational elongation | IEP | Predicted GO |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
| MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
| BP | GO:0030490 | maturation of SSU-rRNA | IEP | Predicted GO |
| MF | GO:0030515 | snoRNA binding | IEP | Predicted GO |
| No external refs found! |