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  5. At5g01980

At5g01980


Description : At5g01980 [Source:UniProtKB/TrEMBL;Acc:Q9LZN3]


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g01980
Cluster HCCA clusters: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
A4A49_07629 No alias e3 ubiquitin-protein ligase ring1-like protein 0.02 Orthogroups_2024-Update
Brara.B00623.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.E02211.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.06 Orthogroups_2024-Update
Cre10.g422050 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.20G149700 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU7Hr1G092570.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Kfl00141_0100 kfl00141_0100_v1.... (at3g19950 : 102.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_433917g0010 No alias (at2g40830 : 92.0) Encodes a putative RING-H2 finger... 0.02 Orthogroups_2024-Update
MA_474338g0010 No alias (at2g39720 : 83.2) Encodes a putative RING-H2 finger... 0.03 Orthogroups_2024-Update
MA_816375g0010 No alias (at2g40830 : 158.0) Encodes a putative RING-H2 finger... 0.04 Orthogroups_2024-Update
Mp7g04520.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
Mp7g15970.1 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.06 Orthogroups_2024-Update
PSME_00021656-RA No alias (at3g46620 : 181.0) zinc finger (C3HC4-type RING finger)... 0.03 Orthogroups_2024-Update
Potri.013G116000 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Seita.8G172700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.005G165900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc03g114680 No alias RING/U-box superfamily protein (AHRD V3.3 *-* AT5G08139.1) 0.03 Orthogroups_2024-Update
Solyc10g045180 No alias E3 ubiquitin-protein ligase (AHRD V3.3 --* A0A0F7G5V7_9ROSI) 0.05 Orthogroups_2024-Update
Sopen02g015860 No alias Ring finger domain 0.05 Orthogroups_2024-Update
evm.model.contig_3384.9 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
CC GO:0000782 telomere cap complex IEP Predicted GO
CC GO:0000783 nuclear telomere cap complex IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
CC GO:1990879 CST complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 350 391
No external refs found!