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  5. Seita.9G530700.1

Seita.9G530700.1


Description : RNA editing factor *(MEF18)


Gene families : OG_42_0010026 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0010026_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G530700.1
Cluster HCAA Clusters: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
Bradi2g13310 No alias mitochondrial editing factor 18 0.03 Orthogroups_2024-Update
GRMZM2G033884 No alias mitochondrial editing factor 18 0.03 Orthogroups_2024-Update
Glyma.15G103100 No alias mitochondrial editing factor 18 0.04 Orthogroups_2024-Update
Potri.010G029900 No alias mitochondrial editing factor 18 0.03 Orthogroups_2024-Update
Sopen01g031970 No alias PPR repeat family 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Predicted GO
BP GO:0000077 DNA damage checkpoint IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0031570 DNA integrity checkpoint IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 450 468
IPR002885 Pentatricopeptide_repeat 345 373
IPR002885 Pentatricopeptide_repeat 375 405
IPR002885 Pentatricopeptide_repeat 211 239
IPR002885 Pentatricopeptide_repeat 550 574
IPR002885 Pentatricopeptide_repeat 80 105
IPR002885 Pentatricopeptide_repeat 110 139
IPR002885 Pentatricopeptide_repeat 242 268
IPR002885 Pentatricopeptide_repeat 480 524
No external refs found!