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  5. Seita.9G531300.1

Seita.9G531300.1


Description : histone *(H2A)


Gene families : OG_42_0000970 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000970_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G531300.1
Cluster HCAA Clusters: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
At3g54560 No alias Histone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944] 0.03 Orthogroups_2024-Update
Brara.D00458.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
Brara.I03717.1 No alias histone *(H2A) 0.05 Orthogroups_2024-Update
Cre13.g567700 No alias histone H2A protein 9 0.03 Orthogroups_2024-Update
GRMZM2G056231 No alias histone H2A 11 0.03 Orthogroups_2024-Update
Glyma.02G143200 No alias histone H2A 11 0.04 Orthogroups_2024-Update
Glyma.03G158100 No alias histone H2A 11 0.06 Orthogroups_2024-Update
Glyma.06G071500 No alias histone H2A protein 9 0.03 Orthogroups_2024-Update
Pp1s376_22V6 No alias histone 2 0.04 Orthogroups_2024-Update
Solyc06g084090 No alias Histone H2A (AHRD V3.3 *** K4CAR4_SOLLC) 0.05 Orthogroups_2024-Update
Sopen06g035480 No alias Core histone H2A/H2B/H3/H4 0.07 Orthogroups_2024-Update
evm.model.contig_2022.11 No alias (q84mp7|h2av3_orysa : 175.0) Probable histone H2A... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0007062 sister chromatid cohesion IEP Predicted GO
BP GO:0007064 mitotic sister chromatid cohesion IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
CC GO:0031390 Ctf18 RFC-like complex IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 13 106
IPR032454 Histone_H2A_C 108 137
No external refs found!