1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.9G535400.1

Seita.9G535400.1


Description : Unknown function


Gene families : OG_42_0002397 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002397_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G535400.1
Cluster HCAA Clusters: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AC233901.1_FG004 No alias winged-helix DNA-binding transcription factor family protein 0.03 Orthogroups_2024-Update
GRMZM2G140339 No alias winged-helix DNA-binding transcription factor family protein 0.03 Orthogroups_2024-Update
PSME_00020983-RA No alias (at5g21160 : 117.0) LA RNA-binding protein; FUNCTIONS... 0.04 Orthogroups_2024-Update
Sobic.001G499500.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
BP GO:0010498 proteasomal protein catabolic process IEP Predicted GO
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015693 magnesium ion transport IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0070838 divalent metal ion transport IEP Predicted GO
BP GO:0072511 divalent inorganic cation transport IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006630 La_HTH 306 358
No external refs found!