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  5. Seita.9G535700.1

Seita.9G535700.1


Description : alpha-class expansin


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G535700.1
Cluster HCAA Clusters: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
At1g26770 No alias Expansin A10 [Source:UniProtKB/TrEMBL;Acc:F4HPC1] 0.03 Orthogroups_2024-Update
Bradi3g59460 No alias expansin A1 0.04 Orthogroups_2024-Update
Brara.E02601.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Kfl00012_0440 kfl00012_0440_v1.1 (q7xt39|expb5_orysa : 107.0) Expansin-B5 precursor... 0.02 Orthogroups_2024-Update
LOC_Os02g16839 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os03g21820 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
Potri.009G031800 No alias expansin A4 0.04 Orthogroups_2024-Update
Pp1s75_138V6 No alias alpha-expansin 8 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004451 isocitrate lyase activity IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0016833 oxo-acid-lyase activity IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 58 145
IPR007117 Expansin_CBD 156 233
No external refs found!