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  5. Seita.9G541500.1

Seita.9G541500.1


Description : E3 ubiquitin ligase *(CHY)


Gene families : OG_42_0001040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001040_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Setaria italica: Seita.9G541500.1
Cluster HCAA Clusters: Cluster_243

Target Alias Description ECC score Gene Family Method Actions
Glyma.17G202700 No alias CHY-type/CTCHY-type/RING-type Zinc finger protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G038130.3 No alias E3 ubiquitin ligase *(CHY) 0.03 Orthogroups_2024-Update
HORVU5Hr1G025720.9 No alias E3 ubiquitin ligase *(CHY) 0.03 Orthogroups_2024-Update
LOC_Os01g52110 No alias RING finger and CHY zinc finger domain-containing... 0.03 Orthogroups_2024-Update
LOC_Os10g31850 No alias RING finger and CHY zinc finger domain-containing... 0.03 Orthogroups_2024-Update
Pp1s51_131V6 No alias zinc finger 0.03 Orthogroups_2024-Update
Solyc08g067960 No alias RING finger and CHY zinc finger protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
CC GO:0005856 cytoskeleton IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008199 ferric iron binding IEP Predicted GO
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR039512 RCHY1_zinc-ribbon 195 253
IPR008913 Znf_CHY 12 93
IPR027370 Znf-RING_LisH 148 188
No external refs found!