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  5. Seita.9G579500.1

Seita.9G579500.1


Description : deubiquitinase


Gene families : OG_42_0000597 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000597_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G579500.1
Cluster HCAA Clusters: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Bradi1g37890 No alias PPPDE putative thiol peptidase family protein 0.04 Orthogroups_2024-Update
Bradi1g71290 No alias PPPDE putative thiol peptidase family protein 0.02 Orthogroups_2024-Update
GRMZM2G071844 No alias PPPDE putative thiol peptidase family protein 0.03 Orthogroups_2024-Update
Pp1s42_276V6 No alias FCAALL.234; expressed protein [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update
Sobic.001G543800.1 No alias deubiquitinase 0.07 Orthogroups_2024-Update
Solyc08g078220 No alias No description available 0.02 Orthogroups_2024-Update
Sopen04g033620 No alias PPPDE putative peptidase domain 0.03 Orthogroups_2024-Update
Sopen12g030950 No alias PPPDE putative peptidase domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008233 peptidase activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
CC GO:0019008 molybdopterin synthase complex IEP Predicted GO
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Predicted GO
MF GO:0032182 ubiquitin-like protein binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0043130 ubiquitin binding IEP Predicted GO
BP GO:0043545 molybdopterin cofactor metabolic process IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0051189 prosthetic group metabolic process IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR008580 PPPDE_dom 38 172
No external refs found!