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  5. Seita.J003800.1

Seita.J003800.1


Description : regulatory protein *(LARP6) of mRNA quality control


Gene families : OG_42_0001098 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001098_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.J003800.1
Cluster HCAA Clusters: Cluster_289

Target Alias Description ECC score Gene Family Method Actions
Brara.E02290.1 No alias regulatory protein *(LARP6) of mRNA quality control 0.02 Orthogroups_2024-Update
Glyma.02G135300 No alias RNA-binding protein 0.02 Orthogroups_2024-Update
PSME_00006517-RA No alias (at2g43970 : 181.0) RNA-binding protein; FUNCTIONS IN:... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001101 response to acid chemical IEP Predicted GO
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
BP GO:0009415 response to water IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
MF GO:0051920 peroxiredoxin activity IEP Predicted GO
BP GO:1901700 response to oxygen-containing compound IEP Predicted GO
InterPro domains Description Start Stop
IPR006630 La_HTH 130 187
IPR000504 RRM_dom 223 292
No external refs found!