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  5. At5g02560

At5g02560


Description : Histone H2A [Source:UniProtKB/TrEMBL;Acc:F4KCF4]


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g02560
Cluster HCCA clusters: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
HORVU7Hr1G112470.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
LOC_Os07g36140 No alias core histone H2A/H2B/H3/H4, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00000143-RA No alias (q84nj4|h2a3_orysa : 176.0) Probable histone H2A.3 -... 0.03 Orthogroups_2024-Update
PSME_00008210-RA No alias (at1g54690 : 107.0) Encodes HTA3, a histone H2A protein.... 0.02 Orthogroups_2024-Update
Sopen03g001250 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP Predicted GO
BP GO:0006188 IMP biosynthetic process IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
MF GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Predicted GO
MF GO:0016842 amidine-lyase activity IEP Predicted GO
MF GO:0016849 phosphorus-oxygen lyase activity IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
BP GO:0046040 IMP metabolic process IEP Predicted GO
MF GO:0051743 red chlorophyll catabolite reductase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 20 98
IPR032454 Histone_H2A_C 101 134
No external refs found!