0.1 1 0.567658 Kfl00007_0470 174012 kfl 0.567658 1 0.121788 1.0 1 0.473634 447112 380672 smo 0.455504 270443 369722 smo 0.0173371 1 0.0537566 1 0.0822004 1 0.048965 1 0.0622081 1 0.0105565 0.0 1 0.0558788 0.0 1 0.0234485 A4A49_32713 731662 nat 0.014224 1 0.00392335 Solyc03g019950 8019 sly 0.00539365 Sopen03g029670 47169 spe 0.00351098 1 0.0391095 1.0 1 0.0458123 Potri.004G067400 755295 ptr 0.0358537 Potri.017G154200 782540 ptr 0.0311381 1.0 1 0.0528885 1.0 1 0.0203546 Glyma.09G161900 681643 gma 0.0149394 Glyma.16G211100 700916 gma 0.033981 1.0 1 0.0180579 Glyma.20G216500 710793 gma 0.0738781 Glyma.10G173800 684470 gma 0.06926 1 0.0241376 1 0.0288135 At1g17940 80565 ath 0.0278935 Brara.F01264.1 871516 bra 0.0168041 1 0.0284066 Brara.G03266.1 877445 bra 0.0348764 At1g73390 85099 ath 0.00878526 1 0.137588 1 0.0830173 1 0.0534454 1 0.0678965 Bradi3g49730 594990 bdi 0.0620895 HORVU6Hr1G060020.1 923825 hvu 0.065266 1 0.0396087 Seita.1G247400.1 967898 sit 0.0973443 Sobic.004G226400.1 948479 sbi 0.0408517 1 0.0180582 1 0.00268993 1 0.0525544 LOC_Os04g44530 211999 osa 0.0689446 HORVU2Hr1G090810.8 902746 hvu 0.0578168 Bradi5g16320 604111 bdi 0.014178 1 0.0622924 Seita.7G175200.1 989733 sit 0.00722764 1 0.0385396 Sobic.006G154800.4 953955 sbi 0.00349734 1.0 1 0.325067 GRMZM2G113990 816262 zma 0.0314761 GRMZM2G131969 819206 zma 0.139621 1 0.00545129 1 0.100421 1 0.280929 Sobic.004G354200.5 949841 sbi 1.21342e-05 Seita.1G375700.1 969181 sit 0.0561946 1 0.0767263 Bradi3g60320 596287 bdi 0.0741077 HORVU6Hr1G093850.5 925636 hvu 0.128004 LOC_Os02g58160 202536 osa 0.365592 1.0 1 0.138793 1.0 1 0.376133 PSME_00024959-RA 551830 pme 0.155688 PSME_00025802-RA 552377 pme 0.0123672 PSME_00034029-RA 557508 pme 0.0463198 1 0.274864 1 0.250814 1 0.0178314 1 0.0257865 1 0.0353647 GRMZM2G122954 817699 zma 0.00301449 1 0.0388989 Seita.8G132000.1 992660 sit 0.0332891 Sobic.005G126300.1 951248 sbi 0.0781017 LOC_Os11g31570 240807 osa 0.0238905 1 0.0554274 HORVU3Hr1G014210.2 905548 hvu 0.0572476 Bradi4g18270 598803 bdi 0.0879888 1 0.0121878 1 0.195737 1 0.0675405 1 0.088016 Brara.J02046.1 888751 bra 0.10714 Brara.C00599.1 859626 bra 0.166103 At5g14020 101113 ath 0.0300682 1 0.107544 1.0 1 0.066019 Potri.017G062000 781569 ptr 0.110851 Potri.001G323600 747988 ptr 0.123803 1.0 1 0.0160851 Glyma.16G051000 699410 gma 0.0435979 Glyma.19G099600 707145 gma 0.186319 0.0 1 0.0774105 A4A49_30860 730534 nat 0.0826655 1 0.00530648 Solyc02g093960 7543 sly 0.00913852 Sopen02g038610 44233 spe 0.111254 1 0.178109 1.0 1 0.434175 PSME_00039218-RA 560736 pme 0.020885 PSME_00032616-RA 556602 pme 0.714077 MA_141902g0010 274090 pab 0.237866 1.0 1 0.144031 1.0 1 0.100898 1.0 1 0.214226 Pp1s51_336V6 315432 ppa 0.204168 Pp1s79_62V6 319839 ppa 0.170386 Pp1s336_10V6 309101 ppa 0.0876582 1.0 1 0.0592649 1.0 1 0.165217 Pp1s53_184V6 315706 ppa 0.155593 Pp1s41_150V6 312821 ppa 0.2286 Pp1s15_309V6 296693 ppa Heatmap

ZT0-3 ZT4-7 ZT8-11 ZT12-15 ZT16-19 ZT20-23 YlGnBu 6

0.36205847199502084 1.0 0.5467828285331879 0.661391463837803 0.0 0.21839973121388875 0.5877560012108822 0.6390821271965976 0.8028389796218091 1.0 0.7987852212407948 0.5339032073396256 0.2883180678321803 1.0 0.14122378928272894 0.05319100254326214 0.333848032677065 0.5188273723774461 0.7531257421815881 0.4685679725616454 0.0 1.0 0.0 0.604215864241831 1.0 0.7331393210741606 0.41173347586951475 0.38919306826437905 0.33593055075318506 0.2903991093088869 0.7767374345305298 0.9512525147916436 1.0 0.9596190249823858 0.7731144368140032 0.7029419171554772 0.9802316045257802 1.0 0.9799084972283393 0.9829166983066293 0.9143746677803932 0.9515912369959754 0.9981620842957554 0.9851565699118042 1.0 0.9757326348489453 0.9735813946379478 0.9687013017614314 0.8817611500106612 0.8833131606107002 0.8963367624005462 1.0 0.994205282376211 0.9833526982846222 0.945424013434089 1.0 0.9571788413098237 0.897774979009236 0.723761544920235 0.8287153652392947 0.3956043956043956 0.4329670329670329 0.7428571428571428 1.0 0.721978021978022 0.6604395604395604 0.571264367816092 0.6873563218390805 0.367816091954023 1.0 0.5885057471264368 0.7080459770114942 0.7007742257304254 0.7705960899697019 0.6010944745180699 0.7618644041720439 0.7062439572600222 1.0 0.7995530546142258 1.0 0.5867113836948873 0.48315108617363617 0.28753086424175833 0.26650238236495344 0.8867279573301765 1.0 0.486143471272331 0.4549272851188462 0.22013480910780858 0.21171315178753958 0.6961712446879464 0.8063375039314288 1.0 0.8837895497538364 0.9133660889181877 0.8499061286727491 1.0 0.24844668447004523 0.19116959730695368 0.2572079975050808 0.2686337943800334 0.41137843808022484 1.0 0.5445041948065306 0.2537886176166109 0.2762371594560084 0.12983453397135658 0.14558702145899746 0.5058179162958006 0.7864035167978444 0.9840507900214529 0.9003718813536579 1.0 0.9554686561599419 0.5858648250118816 0.8112318123513703 1.0 0.5453291474513713 0.33567402737092605 0.27185931414287184 0.9560884255586318 1.0 0.942634342335906 0.7117973101730097 0.5471516711746807 0.5539125484573535 0.49170225785649574 0.272687486227374 0.7104594283787193 0.3476383472185164 1.0 0.20086987076068896 1.0 0.0 0.0 0.0 0.0 0.0 0.9736157593805393 0.8959450992682725 0.562103460777099 0.63018332347198 0.9090982515512688 1.0 0.5648088835558369 0.9251887019373674 0.8954948412781887 1.0 0.8082666676422251 0.7026611706150866 0.0 0.0 0.0 1.0 0.0 0.0 1.0 0.816958131600418 0.6208160836413903 0.4693962501052905 0.4972921606913925 0.4216722008339823 0.5921664837563871 0.5677673538586202 0.8300743835136868 1.0 0.8381696384670152 0.9037482839868933 0.2551450347979641 0.7416311452907746 0.7667173054949621 1.0 0.3936898084257075 0.4628059661072282 0.5068783355258539 0.7312628964489426 0.873251049955056 1.0 0.9017210866031103 0.8346556519081811 1.0 0.3049913536245768 0.2308427171539217 0.1472806134461286 0.1015243194531269 0.1254193695046804 0.7700695821283796 0.8413912637175295 0.6353046428075315 0.6003502784547968 1.0 0.8342452043896095 0.5376725907577932 0.0 0.5005800206663422 0.540884002611158 0.9969209918850352 1.0 0.6503624419625249 0.5283235657852928 0.364999358124259 0.4487222606573157 0.6027625634832535 1.0 1.0 0.0 9.865594534672793e-08 0.0 0.0 0.0 1.0 0.9512565209713225 0.6550484804800981 0.7137859188705143 0.9889093275185558 0.952921675583619 0.09257722183612727 0.16949925809293992 0.12240255616761024 0.0838005125903324 1.0 0.13925421971966087 0.5770168592815387 0.6952901680293644 0.4740875718608347 0.6806163738032782 1.0 0.45465940902127683 0.8881047242632918 0.9507524183847467 0.9423410749273189 0.8776440626905998 0.990009334044342 1.0 1.0 0.6026046956827641 0.5480254590031609 0.7216599810242661 0.8324867647513507 0.8360681349393928 1.0 0.7368272274762552 0.9680574401967437 0.5949796472184532 0.5902306648575305 0.7806422433175034 0.7606153485038918 0.9840613584044452 1.0 0.712634046989041 0.6203097323102025 0.7141408127714933 1.0 0.6245988750634296 0.6593993667764921 0.0 0.6779279440247571 0.6094865600811897 0.4425847083633078 0.8078096261272462 1.0 0.0 0.485966247624977 0.46719383794228575 0.6483156123581427 0.31030716356997096 0.6382486664518671 1.0 0.45819281853005406 0.651584147782193 0.7107151537597945 0.6673473107950141 1.0 0.6389529635073669 0.5986417981273365 0.3590059721531001 1.0 0.42616467571532485 0.17842560745589706 0.2631606198454085 0.2134435445097822 0.2131008296657914 0.8958421040070644 0.5972420705949739 0.6892818787141118 0.746280995680294 0.6985484833297535 1.0 1.0 0.5514750771478032 0.4664522046012706 0.5603798989203489 0.5751476749728903 0.9024060079113086 0.8353617783613196 0.946033805000356 0.5497326605025666 0.8659693825090367 0.894315871898506 1.0 0.9209179465386922 1.0 0.8993949033800855 0.9273392462892905 0.8568961241698901 0.6700229737893424 0.5485357516961575 0.410136439621442 0.8310142415806345 0.863653341434384 1.0 0.8217486649036922 1.0 0.5788949166457172 0.38403644343725446 0.6043616629807885 0.6367983017027907 0.0 1.0 0.6366144419428463 0.6468228158113363 0.9149765436559778 0.9763481607076127 0.0 0.30201089206963494 0.6667831762291103 1.0 0.9846627231853504 0.7037970046546095 0.0 1.0 0.5472233765147184 0.4547550653298565 0.7383765844407569 0.6173148522583074 0.0 Low Expression

Low expression 0xf03b20 circle

1 0 1 1 1 0 1 1 0 0 0 0 0 1 0 0 1 0 0 0 0 1 1 0 0 1 0 1 1 0 1 1 1 1 1 1 0 0 0 0 1 0 1 0 0 1 0 1 1 0 0 1 0 0 0 0 0 0 Expression Range

Max. Expression (TPM) 0x664977

0.0363114 33.3641 2.81135 0.5803555 2.6385503333333333 29.45075 8.779333333333334 5.23419 27.65799194 238.2 45.5 43.5 16.04166052 9.785738942333333 52.20670409 33.93788348333334 8.5222185725 38.994044495 26.638854666666667 108.10065084333334 13.73543508 0.06780509166666666 0.012244916666666666 15.0123075 18.22318333333333 0.0071502 61.14038333333333 2.118525 0.359408 36.32298333333333 8.211533333333334 4.223306666666667 0.1878094 5.73839 0.012568933333333332 4.39799 16.90238666666667 18.599665666666667 10.930952999999999 73.515997 9.826666666666666 302.34000000000003 0.0 27.983800000000002 26.34185 0.0 27.933 1.72802 8.111699999999999 10.475249999999999 11.957566666666667 3.371493333333333 30.513033333333336 40.1594 13.72355 10.793099999999999 63.5141 23.904333333333334 0x8F25CD Selaginella moellendorffii https://diurnal.sbs.ntu.edu.sg/species/view/14 0xA8A419 Nicotiana attenuata https://diurnal.sbs.ntu.edu.sg/species/view/20 0x1DCD2E Arabidopsis thaliana https://diurnal.sbs.ntu.edu.sg/species/view/3 0x338F11 Brachypodium distachyon https://diurnal.sbs.ntu.edu.sg/species/view/17 0x3C7179 Brassica rapa https://diurnal.sbs.ntu.edu.sg/species/view/23 0x8324B3 Glycine max https://diurnal.sbs.ntu.edu.sg/species/view/19 0xB8B835 Zea mays https://diurnal.sbs.ntu.edu.sg/species/view/22 0x468B56 Hordeum vulgare https://diurnal.sbs.ntu.edu.sg/species/view/24 0x23CDBC Klebsormidium nitens https://diurnal.sbs.ntu.edu.sg/species/view/7 0xCD1B50 Oryza sativa https://diurnal.sbs.ntu.edu.sg/species/view/8 0xCD1FC1 Picea abies https://diurnal.sbs.ntu.edu.sg/species/view/10 0x6E3699 Populus trichocarpa https://diurnal.sbs.ntu.edu.sg/species/view/21 0x33CDC8 Physcomitrella patens https://diurnal.sbs.ntu.edu.sg/species/view/11 0x811DCD Pseudotsuga menziesii https://diurnal.sbs.ntu.edu.sg/species/view/16 0x3F5379 Setaria italica https://diurnal.sbs.ntu.edu.sg/species/view/26 0x7E5470 Sorghum bicolor https://diurnal.sbs.ntu.edu.sg/species/view/25 0xCD3914 Solanum lycopersicum https://diurnal.sbs.ntu.edu.sg/species/view/1 0x23CD1D Solanum pennellii https://diurnal.sbs.ntu.edu.sg/species/view/2 0x000000 Arabidopsis https://diurnal.sbs.ntu.edu.sg/clade/view/42 0x000000 Cyanophora https://diurnal.sbs.ntu.edu.sg/clade/view/43 0x000000 Klebsormidium https://diurnal.sbs.ntu.edu.sg/clade/view/44 0x000000 Oryza https://diurnal.sbs.ntu.edu.sg/clade/view/45 0x000000 Chlamydomonas https://diurnal.sbs.ntu.edu.sg/clade/view/46 0x000000 Picea https://diurnal.sbs.ntu.edu.sg/clade/view/47 0x000000 Physcomitrella https://diurnal.sbs.ntu.edu.sg/clade/view/48 0x000000 Porphyridium https://diurnal.sbs.ntu.edu.sg/clade/view/49 0x000000 Selaginella https://diurnal.sbs.ntu.edu.sg/clade/view/50 0x000000 Pseudotsuga https://diurnal.sbs.ntu.edu.sg/clade/view/51 0x000000 Brachypodium https://diurnal.sbs.ntu.edu.sg/clade/view/52 0x000000 Glycine https://diurnal.sbs.ntu.edu.sg/clade/view/53 0x000000 Nicotiana https://diurnal.sbs.ntu.edu.sg/clade/view/54 0x000000 Populus https://diurnal.sbs.ntu.edu.sg/clade/view/55 0x000000 Zea https://diurnal.sbs.ntu.edu.sg/clade/view/56 0x000000 Domesticated_Tomato https://diurnal.sbs.ntu.edu.sg/clade/view/57 0x000000 Wild_Tomato https://diurnal.sbs.ntu.edu.sg/clade/view/58 0x000000 Brassica https://diurnal.sbs.ntu.edu.sg/clade/view/59 0x000000 Sorghum https://diurnal.sbs.ntu.edu.sg/clade/view/60 0x000000 Setaria https://diurnal.sbs.ntu.edu.sg/clade/view/61 0x000000 Hordeum https://diurnal.sbs.ntu.edu.sg/clade/view/62 0x000000 Marchantia https://diurnal.sbs.ntu.edu.sg/clade/view/63 0x000000 Archaeplastida https://diurnal.sbs.ntu.edu.sg/clade/view/64