Coexpression cluster: Cluster_15 (HCCA clusters)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0044444 cytoplasmic part 7.59% (18/237) 2.5 0.0 1e-06
GO:0003723 RNA binding 5.91% (14/237) 2.65 0.0 1.1e-05
GO:1990904 ribonucleoprotein complex 5.06% (12/237) 2.66 0.0 6e-05
GO:0006520 cellular amino acid metabolic process 3.8% (9/237) 3.0 2e-06 0.000176
GO:0006555 methionine metabolic process 1.27% (3/237) 6.23 2e-06 0.000185
GO:1901566 organonitrogen compound biosynthetic process 5.91% (14/237) 2.05 8e-06 0.000534
GO:0006518 peptide metabolic process 3.8% (9/237) 2.41 5.3e-05 0.001586
GO:0003743 translation initiation factor activity 1.69% (4/237) 4.23 5e-05 0.001627
GO:0000096 sulfur amino acid metabolic process 1.27% (3/237) 5.23 4.6e-05 0.001629
GO:0008312 7S RNA binding 1.27% (3/237) 5.23 4.6e-05 0.001629
GO:0048500 signal recognition particle 1.27% (3/237) 5.23 4.6e-05 0.001629
GO:0006790 sulfur compound metabolic process 1.69% (4/237) 3.9 0.000127 0.00178
GO:0090150 establishment of protein localization to membrane 1.27% (3/237) 4.81 0.000125 0.001822
GO:0070972 protein localization to endoplasmic reticulum 1.27% (3/237) 4.81 0.000125 0.001822
GO:0072599 establishment of protein localization to endoplasmic reticulum 1.27% (3/237) 4.81 0.000125 0.001822
GO:0072657 protein localization to membrane 1.27% (3/237) 4.81 0.000125 0.001822
GO:0045047 protein targeting to ER 1.27% (3/237) 4.81 0.000125 0.001822
GO:0006614 SRP-dependent cotranslational protein targeting to membrane 1.27% (3/237) 4.81 0.000125 0.001822
GO:0006613 cotranslational protein targeting to membrane 1.27% (3/237) 4.81 0.000125 0.001822
GO:0006612 protein targeting to membrane 1.27% (3/237) 4.81 0.000125 0.001822
GO:0043604 amide biosynthetic process 3.8% (9/237) 2.36 6.7e-05 0.001876
GO:0019752 carboxylic acid metabolic process 3.8% (9/237) 2.32 8.5e-05 0.00195
GO:0043603 cellular amide metabolic process 3.8% (9/237) 2.32 8.5e-05 0.00195
GO:0006082 organic acid metabolic process 3.8% (9/237) 2.3 9.5e-05 0.001955
GO:0043436 oxoacid metabolic process 3.8% (9/237) 2.3 9.5e-05 0.001955
GO:0005198 structural molecule activity 3.8% (9/237) 2.34 7.5e-05 0.001969
GO:0003735 structural constituent of ribosome 3.8% (9/237) 2.48 3.6e-05 0.002012
GO:0043043 peptide biosynthetic process 3.8% (9/237) 2.44 4.4e-05 0.002136
GO:0006605 protein targeting 1.27% (3/237) 4.64 0.000186 0.002214
GO:0044272 sulfur compound biosynthetic process 1.27% (3/237) 4.64 0.000186 0.002214
GO:0009066 aspartate family amino acid metabolic process 1.27% (3/237) 4.64 0.000186 0.002214
GO:0006412 translation 3.38% (8/237) 2.33 0.000198 0.002281
GO:0008172 S-methyltransferase activity 0.84% (2/237) 6.23 0.000178 0.002322
GO:0009086 methionine biosynthetic process 0.84% (2/237) 6.23 0.000178 0.002322
GO:0009058 biosynthetic process 8.02% (19/237) 1.31 0.000258 0.002884
GO:1901576 organic substance biosynthetic process 7.59% (18/237) 1.35 0.000268 0.002917
GO:0072594 establishment of protein localization to organelle 1.27% (3/237) 4.35 0.000359 0.003607
GO:0033365 protein localization to organelle 1.27% (3/237) 4.35 0.000359 0.003607
GO:0008135 translation factor activity, RNA binding 1.69% (4/237) 3.53 0.000368 0.003611
GO:0050662 coenzyme binding 3.8% (9/237) 2.05 0.000351 0.003715
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors 2.11% (5/237) 2.99 0.000396 0.003787
GO:0070727 cellular macromolecule localization 1.27% (3/237) 4.23 0.000474 0.004319
GO:0034613 cellular protein localization 1.27% (3/237) 4.23 0.000474 0.004319
GO:0044249 cellular biosynthetic process 7.17% (17/237) 1.32 0.0005 0.004452
GO:0097159 organic cyclic compound binding 16.88% (40/237) 0.75 0.000736 0.005444
GO:1901363 heterocyclic compound binding 16.88% (40/237) 0.75 0.000736 0.005444
GO:0001882 nucleoside binding 2.95% (7/237) 2.23 0.000767 0.005568
GO:1901605 alpha-amino acid metabolic process 1.69% (4/237) 3.27 0.000736 0.005657
GO:0032549 ribonucleoside binding 2.95% (7/237) 2.24 0.000727 0.005701
GO:0005525 GTP binding 2.95% (7/237) 2.24 0.000727 0.005701
GO:0001883 purine nucleoside binding 2.95% (7/237) 2.24 0.000727 0.005701
GO:0032550 purine ribonucleoside binding 2.95% (7/237) 2.24 0.000727 0.005701
GO:0019001 guanyl nucleotide binding 2.95% (7/237) 2.24 0.000727 0.005701
GO:0032561 guanyl ribonucleotide binding 2.95% (7/237) 2.24 0.000727 0.005701
GO:0044281 small molecule metabolic process 5.49% (13/237) 1.49 0.000804 0.005732
GO:0009236 cobalamin biosynthetic process 0.84% (2/237) 5.23 0.001048 0.006845
GO:0000097 sulfur amino acid biosynthetic process 0.84% (2/237) 5.23 0.001048 0.006845
GO:0044391 ribosomal subunit 0.84% (2/237) 5.23 0.001048 0.006845
GO:0005852 eukaryotic translation initiation factor 3 complex 0.84% (2/237) 5.23 0.001048 0.006845
GO:0005840 ribosome 2.95% (7/237) 2.16 0.000993 0.006949
GO:0044464 cell part 8.44% (20/237) 1.11 0.001087 0.006982
GO:0034645 cellular macromolecule biosynthetic process 3.8% (9/237) 1.81 0.001136 0.007183
GO:0044424 intracellular part 8.02% (19/237) 1.12 0.001271 0.007911
GO:0043038 amino acid activation 1.69% (4/237) 2.98 0.001605 0.00939
GO:0016875 ligase activity, forming carbon-oxygen bonds 1.69% (4/237) 2.98 0.001605 0.00939
GO:0004812 aminoacyl-tRNA ligase activity 1.69% (4/237) 2.98 0.001605 0.00939
GO:0043039 tRNA aminoacylation 1.69% (4/237) 2.98 0.001605 0.00939
GO:0005488 binding 24.05% (57/237) 0.54 0.001697 0.009784
GO:0009235 cobalamin metabolic process 0.84% (2/237) 4.9 0.001731 0.009833
GO:0015833 peptide transport 2.11% (5/237) 2.5 0.00188 0.010093
GO:0045184 establishment of protein localization 2.11% (5/237) 2.5 0.00188 0.010093
GO:0042886 amide transport 2.11% (5/237) 2.5 0.00188 0.010093
GO:0015031 protein transport 2.11% (5/237) 2.5 0.00188 0.010093
GO:0003676 nucleic acid binding 8.02% (19/237) 1.07 0.001951 0.010337
GO:0008104 protein localization 2.11% (5/237) 2.48 0.002009 0.010364
GO:0033036 macromolecule localization 2.11% (5/237) 2.48 0.002009 0.010364
GO:0009059 macromolecule biosynthetic process 3.8% (9/237) 1.68 0.002106 0.010722
GO:0044429 mitochondrial part 1.27% (3/237) 3.49 0.002269 0.011402
GO:0043232 intracellular non-membrane-bounded organelle 2.95% (7/237) 1.95 0.002361 0.011571
GO:0043228 non-membrane-bounded organelle 2.95% (7/237) 1.95 0.002361 0.011571
GO:0004177 aminopeptidase activity 0.84% (2/237) 4.64 0.002573 0.012453
GO:0044271 cellular nitrogen compound biosynthetic process 5.49% (13/237) 1.29 0.002729 0.013045
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 1.69% (4/237) 2.77 0.002773 0.013097
GO:0003674 molecular_function 36.29% (86/237) 0.38 0.002977 0.013893
GO:0009067 aspartate family amino acid biosynthetic process 0.84% (2/237) 4.23 0.004719 0.021764
GO:0071702 organic substance transport 2.11% (5/237) 2.17 0.005088 0.02319
GO:0032991 protein-containing complex 5.91% (14/237) 1.12 0.005414 0.024392
GO:0051188 cofactor biosynthetic process 1.69% (4/237) 2.47 0.005824 0.025943
GO:0000049 tRNA binding 0.84% (2/237) 4.06 0.006014 0.026196
GO:0031966 mitochondrial membrane 0.84% (2/237) 4.06 0.006014 0.026196
GO:0048037 cofactor binding 4.22% (10/237) 1.35 0.006334 0.027285
GO:0071705 nitrogen compound transport 2.11% (5/237) 2.07 0.006821 0.029063
GO:0005622 intracellular 2.11% (5/237) 2.04 0.007481 0.031531
GO:0017144 drug metabolic process 1.69% (4/237) 2.32 0.008441 0.034828
GO:0140101 catalytic activity, acting on a tRNA 1.69% (4/237) 2.32 0.008441 0.034828
GO:0031090 organelle membrane 0.84% (2/237) 3.77 0.009028 0.036866
GO:0003924 GTPase activity 1.69% (4/237) 2.27 0.009459 0.038225
GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity 0.42% (1/237) 6.23 0.01336 0.039674
GO:0004819 glutamine-tRNA ligase activity 0.42% (1/237) 6.23 0.01336 0.039674
GO:0004826 phenylalanine-tRNA ligase activity 0.42% (1/237) 6.23 0.01336 0.039674
GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity 0.42% (1/237) 6.23 0.01336 0.039674
GO:0000314 organellar small ribosomal subunit 0.42% (1/237) 6.23 0.01336 0.039674
GO:0005763 mitochondrial small ribosomal subunit 0.42% (1/237) 6.23 0.01336 0.039674
GO:0004375 glycine dehydrogenase (decarboxylating) activity 0.42% (1/237) 6.23 0.01336 0.039674
GO:0006432 phenylalanyl-tRNA aminoacylation 0.42% (1/237) 6.23 0.01336 0.039674
GO:0015935 small ribosomal subunit 0.42% (1/237) 6.23 0.01336 0.039674
GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity 0.42% (1/237) 6.23 0.01336 0.039674
GO:0006425 glutaminyl-tRNA aminoacylation 0.42% (1/237) 6.23 0.01336 0.039674
GO:0042135 neurotransmitter catabolic process 0.42% (1/237) 6.23 0.01336 0.039674
GO:0001505 regulation of neurotransmitter levels 0.42% (1/237) 6.23 0.01336 0.039674
GO:0008939 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity 0.42% (1/237) 6.23 0.01336 0.039674
GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity 0.42% (1/237) 6.23 0.01336 0.039674
GO:0046500 S-adenosylmethionine metabolic process 0.42% (1/237) 6.23 0.01336 0.039674
GO:0006544 glycine metabolic process 0.42% (1/237) 6.23 0.01336 0.039674
GO:0006546 glycine catabolic process 0.42% (1/237) 6.23 0.01336 0.039674
GO:0008705 methionine synthase activity 0.42% (1/237) 6.23 0.01336 0.039674
GO:0031419 cobalamin binding 0.42% (1/237) 6.23 0.01336 0.039674
GO:0042084 5-methyltetrahydrofolate-dependent methyltransferase activity 0.42% (1/237) 6.23 0.01336 0.039674
GO:0051073 adenosylcobinamide-GDP ribazoletransferase activity 0.42% (1/237) 6.23 0.01336 0.039674
GO:0016642 oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor 0.42% (1/237) 6.23 0.01336 0.039674
GO:0042133 neurotransmitter metabolic process 0.42% (1/237) 6.23 0.01336 0.039674
GO:0006556 S-adenosylmethionine biosynthetic process 0.42% (1/237) 6.23 0.01336 0.039674
GO:0004478 methionine adenosyltransferase activity 0.42% (1/237) 6.23 0.01336 0.039674
GO:0009071 serine family amino acid catabolic process 0.42% (1/237) 6.23 0.01336 0.039674
GO:0031227 intrinsic component of endoplasmic reticulum membrane 0.42% (1/237) 6.23 0.01336 0.039674
GO:0008818 cobalamin 5'-phosphate synthase activity 0.42% (1/237) 6.23 0.01336 0.039674
GO:0030176 integral component of endoplasmic reticulum membrane 0.42% (1/237) 6.23 0.01336 0.039674
GO:0034641 cellular nitrogen compound metabolic process 7.59% (18/237) 0.87 0.010261 0.041042
GO:0006418 tRNA aminoacylation for protein translation 1.27% (3/237) 2.72 0.010384 0.041114
GO:0010181 FMN binding 0.84% (2/237) 3.42 0.01455 0.042884
GO:0051287 NAD binding 1.27% (3/237) 2.68 0.011247 0.044087
GO:0006399 tRNA metabolic process 1.69% (4/237) 2.14 0.012982 0.049892
GO:0051186 cofactor metabolic process 1.69% (4/237) 2.14 0.012982 0.049892
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum lycopersicum HCCA clusters Cluster_26 0.026 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_94 0.02 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_122 0.027 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_43 0.023 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_59 0.028 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_184 0.025 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_6 0.023 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_8 0.033 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_20 0.022 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_38 0.02 Orthogroups_2024-Update Compare
Pseudotsuga menziesii HCCA clusters Cluster_193 0.021 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_59 0.021 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_384 0.021 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_441 0.022 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_119 0.024 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_125 0.021 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_72 0.021 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_79 0.021 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_135 0.021 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_147 0.02 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_35 0.021 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0021 0.025 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0036 0.024 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0050 0.02 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0096 0.023 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_8 0.024 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_32 0.02 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_212 0.024 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_390 0.022 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_66 0.031 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_45 0.021 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_75 0.024 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_123 0.021 Orthogroups_2024-Update Compare
Sequences (237) (download table)

InterPro Domains

GO Terms

Family Terms