Coexpression cluster: Cluster_124 (HCCA clusters)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006259 DNA metabolic process 26.92% (14/52) 5.36 0.0 0.0
GO:0090304 nucleic acid metabolic process 26.92% (14/52) 3.78 0.0 0.0
GO:0006974 cellular response to DNA damage stimulus 13.46% (7/52) 5.22 0.0 0.0
GO:0033554 cellular response to stress 13.46% (7/52) 5.22 0.0 0.0
GO:0051716 cellular response to stimulus 13.46% (7/52) 5.22 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 26.92% (14/52) 3.09 0.0 0.0
GO:0006281 DNA repair 13.46% (7/52) 5.31 0.0 0.0
GO:0046483 heterocycle metabolic process 26.92% (14/52) 2.97 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 26.92% (14/52) 2.97 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 26.92% (14/52) 2.94 0.0 0.0
GO:0006950 response to stress 13.46% (7/52) 4.88 0.0 0.0
GO:0050896 response to stimulus 13.46% (7/52) 4.8 0.0 0.0
GO:0006270 DNA replication initiation 7.69% (4/52) 7.24 0.0 0.0
GO:0003677 DNA binding 19.23% (10/52) 3.58 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 26.92% (14/52) 2.7 0.0 0.0
GO:0044260 cellular macromolecule metabolic process 30.77% (16/52) 2.34 0.0 0.0
GO:0043015 gamma-tubulin binding 5.77% (3/52) 7.68 0.0 2e-06
GO:0003676 nucleic acid binding 23.08% (12/52) 2.59 0.0 4e-06
GO:0006260 DNA replication 7.69% (4/52) 5.89 1e-06 4e-06
GO:0043170 macromolecule metabolic process 30.77% (16/52) 1.94 2e-06 1.2e-05
GO:0030983 mismatched DNA binding 5.77% (3/52) 6.68 3e-06 2e-05
GO:0006298 mismatch repair 5.77% (3/52) 6.54 4e-06 2.6e-05
GO:0030554 adenyl nucleotide binding 23.08% (12/52) 2.17 9e-06 5.5e-05
GO:0005524 ATP binding 23.08% (12/52) 2.18 9e-06 5.5e-05
GO:0032559 adenyl ribonucleotide binding 23.08% (12/52) 2.18 9e-06 5.5e-05
GO:0000166 nucleotide binding 25.0% (13/52) 1.98 1.6e-05 8.4e-05
GO:1901265 nucleoside phosphate binding 25.0% (13/52) 1.98 1.6e-05 8.4e-05
GO:0008144 drug binding 23.08% (12/52) 2.11 1.5e-05 8.4e-05
GO:0006807 nitrogen compound metabolic process 30.77% (16/52) 1.66 2e-05 0.000104
GO:0035639 purine ribonucleoside triphosphate binding 23.08% (12/52) 2.02 2.7e-05 0.000122
GO:0044237 cellular metabolic process 30.77% (16/52) 1.63 2.7e-05 0.000123
GO:0032555 purine ribonucleotide binding 23.08% (12/52) 2.01 2.8e-05 0.000123
GO:0017076 purine nucleotide binding 23.08% (12/52) 2.01 2.9e-05 0.000123
GO:0003690 double-stranded DNA binding 5.77% (3/52) 5.68 2.6e-05 0.000125
GO:0036094 small molecule binding 25.0% (13/52) 1.91 2.6e-05 0.000127
GO:0032553 ribonucleotide binding 23.08% (12/52) 1.99 3.2e-05 0.000133
GO:0097367 carbohydrate derivative binding 23.08% (12/52) 1.98 3.5e-05 0.000139
GO:0044238 primary metabolic process 30.77% (16/52) 1.53 6.5e-05 0.000254
GO:0043168 anion binding 23.08% (12/52) 1.86 8.1e-05 0.000308
GO:0071704 organic substance metabolic process 30.77% (16/52) 1.47 0.000104 0.000383
GO:0009987 cellular process 30.77% (16/52) 1.42 0.000158 0.000569
GO:0005634 nucleus 7.69% (4/52) 3.61 0.000323 0.001137
GO:0140097 catalytic activity, acting on DNA 5.77% (3/52) 4.41 0.000374 0.001288
GO:0015631 tubulin binding 5.77% (3/52) 4.36 0.000422 0.001421
GO:1901363 heterocyclic compound binding 26.92% (14/52) 1.42 0.000454 0.001462
GO:0097159 organic cyclic compound binding 26.92% (14/52) 1.42 0.000454 0.001462
GO:0008092 cytoskeletal protein binding 5.77% (3/52) 4.22 0.00056 0.001762
GO:0043231 intracellular membrane-bounded organelle 7.69% (4/52) 3.29 0.00075 0.002265
GO:0043227 membrane-bounded organelle 7.69% (4/52) 3.29 0.00075 0.002265
GO:0003678 DNA helicase activity 3.85% (2/52) 5.33 0.001114 0.003234
GO:0043167 ion binding 23.08% (12/52) 1.45 0.001095 0.00324
GO:0008152 metabolic process 30.77% (16/52) 1.14 0.001403 0.003994
GO:0034645 cellular macromolecule biosynthetic process 7.69% (4/52) 2.83 0.0024 0.006702
GO:0042555 MCM complex 1.92% (1/52) 8.41 0.002931 0.007112
GO:0051097 negative regulation of helicase activity 1.92% (1/52) 8.41 0.002931 0.007112
GO:1905775 negative regulation of DNA helicase activity 1.92% (1/52) 8.41 0.002931 0.007112
GO:1905462 regulation of DNA duplex unwinding 1.92% (1/52) 8.41 0.002931 0.007112
GO:1905463 negative regulation of DNA duplex unwinding 1.92% (1/52) 8.41 0.002931 0.007112
GO:2001251 negative regulation of chromosome organization 1.92% (1/52) 8.41 0.002931 0.007112
GO:1905774 regulation of DNA helicase activity 1.92% (1/52) 8.41 0.002931 0.007112
GO:0051095 regulation of helicase activity 1.92% (1/52) 8.41 0.002931 0.007112
GO:0005488 binding 32.69% (17/52) 0.99 0.003107 0.007417
GO:0009059 macromolecule biosynthetic process 7.69% (4/52) 2.7 0.003314 0.007784
GO:0004386 helicase activity 3.85% (2/52) 4.46 0.003711 0.008582
GO:0010639 negative regulation of organelle organization 1.92% (1/52) 7.41 0.005854 0.012033
GO:0043140 ATP-dependent 3'-5' DNA helicase activity 1.92% (1/52) 7.41 0.005854 0.012033
GO:0043138 3'-5' DNA helicase activity 1.92% (1/52) 7.41 0.005854 0.012033
GO:0033044 regulation of chromosome organization 1.92% (1/52) 7.41 0.005854 0.012033
GO:0043086 negative regulation of catalytic activity 1.92% (1/52) 7.41 0.005854 0.012033
GO:0044092 negative regulation of molecular function 1.92% (1/52) 7.41 0.005854 0.012033
GO:0051129 negative regulation of cellular component organization 1.92% (1/52) 7.41 0.005854 0.012033
GO:0051346 negative regulation of hydrolase activity 1.92% (1/52) 7.41 0.005854 0.012033
GO:0051336 regulation of hydrolase activity 1.92% (1/52) 6.83 0.008768 0.017303
GO:0043226 organelle 7.69% (4/52) 2.3 0.008751 0.017503
GO:0043229 intracellular organelle 7.69% (4/52) 2.31 0.008643 0.017524
GO:0000808 origin recognition complex 1.92% (1/52) 6.41 0.011674 0.022439
GO:0003910 DNA ligase (ATP) activity 1.92% (1/52) 6.41 0.011674 0.022439
GO:0003909 DNA ligase activity 1.92% (1/52) 6.09 0.014572 0.02765
GO:0006310 DNA recombination 1.92% (1/52) 5.83 0.017461 0.030765
GO:0050790 regulation of catalytic activity 1.92% (1/52) 5.83 0.017461 0.030765
GO:0006284 base-excision repair 1.92% (1/52) 5.83 0.017461 0.030765
GO:0065009 regulation of molecular function 1.92% (1/52) 5.83 0.017461 0.030765
GO:0033043 regulation of organelle organization 1.92% (1/52) 5.83 0.017461 0.030765
GO:0016886 ligase activity, forming phosphoric ester bonds 1.92% (1/52) 5.83 0.017461 0.030765
GO:0004003 ATP-dependent DNA helicase activity 1.92% (1/52) 5.61 0.020342 0.03542
GO:0060249 anatomical structure homeostasis 1.92% (1/52) 5.41 0.023215 0.037757
GO:0051128 regulation of cellular component organization 1.92% (1/52) 5.41 0.023215 0.037757
GO:0032200 telomere organization 1.92% (1/52) 5.41 0.023215 0.037757
GO:0070035 purine NTP-dependent helicase activity 1.92% (1/52) 5.41 0.023215 0.037757
GO:0000723 telomere maintenance 1.92% (1/52) 5.41 0.023215 0.037757
GO:0008026 ATP-dependent helicase activity 1.92% (1/52) 5.41 0.023215 0.037757
GO:0008150 biological_process 30.77% (16/52) 0.71 0.025184 0.040514
GO:0048523 negative regulation of cellular process 1.92% (1/52) 5.09 0.028936 0.046048
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum lycopersicum HCCA clusters Cluster_34 0.031 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_77 0.024 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_227 0.025 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_100 0.033 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_247 0.02 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_4 0.02 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_18 0.03 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_38 0.028 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_131 0.053 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_272 0.028 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_198 0.03 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_29 0.025 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_162 0.025 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_234 0.024 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_336 0.029 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_471 0.021 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_54 0.077 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_81 0.02 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_114 0.021 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_133 0.031 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_24 0.04 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_154 0.021 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_73 0.052 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_97 0.042 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_191 0.024 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_114 0.023 Orthogroups_2024-Update Compare
Sequences (52) (download table)

InterPro Domains

GO Terms

Family Terms