Coexpression cluster: Cluster_132 (HCCA clusters)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 3.17% (2/63) 8.0 2.2e-05 0.002929
GO:0010498 proteasomal protein catabolic process 3.17% (2/63) 8.0 2.2e-05 0.002929
GO:0030163 protein catabolic process 3.17% (2/63) 7.19 7.8e-05 0.006809
GO:0044424 intracellular part 15.87% (10/63) 1.9 0.000301 0.019611
GO:0044422 organelle part 7.94% (5/63) 2.8 0.000767 0.025021
GO:0044446 intracellular organelle part 7.94% (5/63) 2.8 0.000767 0.025021
GO:0044464 cell part 15.87% (10/63) 1.81 0.000488 0.025497
GO:0032991 protein-containing complex 12.7% (8/63) 2.03 0.000722 0.031411
GO:0051236 establishment of RNA localization 1.59% (1/63) 6.42 0.011657 0.038512
GO:0043248 proteasome assembly 1.59% (1/63) 6.42 0.011657 0.038512
GO:0051028 mRNA transport 1.59% (1/63) 6.42 0.011657 0.038512
GO:0050657 nucleic acid transport 1.59% (1/63) 6.42 0.011657 0.038512
GO:0006406 mRNA export from nucleus 1.59% (1/63) 6.42 0.011657 0.038512
GO:0006405 RNA export from nucleus 1.59% (1/63) 6.42 0.011657 0.038512
GO:0050658 RNA transport 1.59% (1/63) 6.42 0.011657 0.038512
GO:0010564 regulation of cell cycle process 1.59% (1/63) 6.42 0.011657 0.038512
GO:0051168 nuclear export 1.59% (1/63) 6.42 0.011657 0.038512
GO:0031145 anaphase-promoting complex-dependent catabolic process 1.59% (1/63) 9.0 0.001952 0.039193
GO:0016530 metallochaperone activity 1.59% (1/63) 9.0 0.001952 0.039193
GO:0031970 organelle envelope lumen 1.59% (1/63) 9.0 0.001952 0.039193
GO:0016531 copper chaperone activity 1.59% (1/63) 9.0 0.001952 0.039193
GO:0005758 mitochondrial intermembrane space 1.59% (1/63) 9.0 0.001952 0.039193
GO:0006974 cellular response to DNA damage stimulus 3.17% (2/63) 3.68 0.010747 0.040071
GO:0033554 cellular response to stress 3.17% (2/63) 3.68 0.010747 0.040071
GO:0051716 cellular response to stimulus 3.17% (2/63) 3.68 0.010747 0.040071
GO:0006281 DNA repair 3.17% (2/63) 3.75 0.009741 0.041008
GO:0010965 regulation of mitotic sister chromatid separation 1.59% (1/63) 7.0 0.007786 0.041473
GO:0051983 regulation of chromosome segregation 1.59% (1/63) 7.0 0.007786 0.041473
GO:0031974 membrane-enclosed lumen 1.59% (1/63) 7.0 0.007786 0.041473
GO:0043233 organelle lumen 1.59% (1/63) 7.0 0.007786 0.041473
GO:0030071 regulation of mitotic metaphase/anaphase transition 1.59% (1/63) 7.0 0.007786 0.041473
GO:0007088 regulation of mitotic nuclear division 1.59% (1/63) 7.0 0.007786 0.041473
GO:0070013 intracellular organelle lumen 1.59% (1/63) 7.0 0.007786 0.041473
GO:0007346 regulation of mitotic cell cycle 1.59% (1/63) 7.0 0.007786 0.041473
GO:0033045 regulation of sister chromatid segregation 1.59% (1/63) 7.0 0.007786 0.041473
GO:0032200 telomere organization 1.59% (1/63) 7.0 0.007786 0.041473
GO:0060249 anatomical structure homeostasis 1.59% (1/63) 7.0 0.007786 0.041473
GO:0006556 S-adenosylmethionine biosynthetic process 1.59% (1/63) 7.0 0.007786 0.041473
GO:0004478 methionine adenosyltransferase activity 1.59% (1/63) 7.0 0.007786 0.041473
GO:1901987 regulation of cell cycle phase transition 1.59% (1/63) 7.0 0.007786 0.041473
GO:1901990 regulation of mitotic cell cycle phase transition 1.59% (1/63) 7.0 0.007786 0.041473
GO:0051783 regulation of nuclear division 1.59% (1/63) 7.0 0.007786 0.041473
GO:1902099 regulation of metaphase/anaphase transition of cell cycle 1.59% (1/63) 7.0 0.007786 0.041473
GO:0046500 S-adenosylmethionine metabolic process 1.59% (1/63) 7.0 0.007786 0.041473
GO:0033047 regulation of mitotic sister chromatid segregation 1.59% (1/63) 7.0 0.007786 0.041473
GO:1905818 regulation of chromosome separation 1.59% (1/63) 7.0 0.007786 0.041473
GO:0000723 telomere maintenance 1.59% (1/63) 7.0 0.007786 0.041473
GO:0000152 nuclear ubiquitin ligase complex 1.59% (1/63) 6.68 0.009723 0.041603
GO:0033044 regulation of chromosome organization 1.59% (1/63) 6.68 0.009723 0.041603
GO:0005680 anaphase-promoting complex 1.59% (1/63) 6.68 0.009723 0.041603
GO:0004176 ATP-dependent peptidase activity 1.59% (1/63) 6.68 0.009723 0.041603
GO:0044444 cytoplasmic part 7.94% (5/63) 1.91 0.010722 0.041769
GO:0043043 peptide biosynthetic process 6.35% (4/63) 2.33 0.00834 0.041863
GO:0003735 structural constituent of ribosome 6.35% (4/63) 2.33 0.00834 0.041863
GO:0009057 macromolecule catabolic process 3.17% (2/63) 3.54 0.01289 0.042052
GO:1901565 organonitrogen compound catabolic process 3.17% (2/63) 4.83 0.002264 0.042205
GO:0043603 cellular amide metabolic process 6.35% (4/63) 2.23 0.010538 0.042316
GO:0005575 cellular_component 17.46% (11/63) 1.13 0.010709 0.042349
GO:0006412 translation 6.35% (4/63) 2.34 0.008132 0.042449
GO:0005198 structural molecule activity 6.35% (4/63) 2.23 0.010457 0.042645
GO:0051603 proteolysis involved in cellular protein catabolic process 3.17% (2/63) 3.81 0.009016 0.042786
GO:0044427 chromosomal part 3.17% (2/63) 3.81 0.009016 0.042786
GO:1990904 ribonucleoprotein complex 6.35% (4/63) 2.24 0.010376 0.042987
GO:0034641 cellular nitrogen compound metabolic process 11.11% (7/63) 1.56 0.009507 0.043534
GO:0043170 macromolecule metabolic process 15.87% (10/63) 1.15 0.01369 0.043576
GO:0006518 peptide metabolic process 6.35% (4/63) 2.28 0.00936 0.043623
GO:0031461 cullin-RING ubiquitin ligase complex 1.59% (1/63) 6.19 0.013587 0.043779
GO:0043604 amide biosynthetic process 6.35% (4/63) 2.3 0.008987 0.044256
GO:0005622 intracellular 4.76% (3/63) 2.57 0.014097 0.044329
GO:0044249 cellular biosynthetic process 9.52% (6/63) 1.58 0.014916 0.046345
GO:0015934 large ribosomal subunit 1.59% (1/63) 6.0 0.015513 0.047079
GO:0044391 ribosomal subunit 1.59% (1/63) 6.0 0.015513 0.047079
GO:0042623 ATPase activity, coupled 3.17% (2/63) 3.37 0.016112 0.048336
GO:0044271 cellular nitrogen compound biosynthetic process 7.94% (5/63) 1.75 0.016521 0.049001
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum lycopersicum HCCA clusters Cluster_27 0.022 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_133 0.028 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_234 0.024 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_44 0.02 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_58 0.025 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_3 0.024 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_45 0.024 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_156 0.02 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_24 0.027 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_166 0.031 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_296 0.021 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_301 0.022 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_13 0.026 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_87 0.021 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_298 0.028 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_25 0.028 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_23 0.028 Orthogroups_2024-Update Compare
Pseudotsuga menziesii HCCA clusters Cluster_135 0.02 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_142 0.021 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_172 0.026 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_223 0.025 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_39 0.024 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_65 0.024 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_76 0.026 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_480 0.024 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_4 0.023 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_84 0.02 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_105 0.02 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_80 0.023 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_143 0.025 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_219 0.025 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0071 0.031 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0089 0.022 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0169 0.02 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_8 0.02 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_38 0.023 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_114 0.022 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_154 0.029 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_169 0.03 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_24 0.032 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_124 0.027 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_233 0.025 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_252 0.024 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_134 0.022 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_171 0.022 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_265 0.03 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_5 0.023 Orthogroups_2024-Update Compare
Sequences (63) (download table)

InterPro Domains

GO Terms

Family Terms