Coexpression cluster: Cluster_194 (HCCA clusters)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016569 covalent chromatin modification 4.0% (2/50) 6.09 0.000393 0.01109
GO:0016570 histone modification 4.0% (2/50) 6.09 0.000393 0.01109
GO:0016999 antibiotic metabolic process 4.0% (2/50) 6.32 0.000287 0.012152
GO:0006101 citrate metabolic process 4.0% (2/50) 6.32 0.000287 0.012152
GO:0006099 tricarboxylic acid cycle 4.0% (2/50) 6.32 0.000287 0.012152
GO:0072350 tricarboxylic acid metabolic process 4.0% (2/50) 6.17 0.000356 0.012912
GO:0008033 tRNA processing 4.0% (2/50) 5.73 0.000653 0.015085
GO:0004611 phosphoenolpyruvate carboxykinase activity 4.0% (2/50) 5.79 0.000605 0.015378
GO:0016070 RNA metabolic process 10.0% (5/50) 3.14 0.000258 0.021852
GO:0015977 carbon fixation 4.0% (2/50) 6.4 0.000255 0.032434
GO:0008023 transcription elongation factor complex 2.0% (1/50) 7.9 0.004175 0.033138
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 2.0% (1/50) 7.9 0.004175 0.033138
GO:0008104 protein localization 6.0% (3/50) 3.24 0.003983 0.033724
GO:0015031 protein transport 6.0% (3/50) 3.24 0.003983 0.033724
GO:0015833 peptide transport 6.0% (3/50) 3.24 0.003983 0.033724
GO:0042886 amide transport 6.0% (3/50) 3.24 0.003983 0.033724
GO:0033036 macromolecule localization 6.0% (3/50) 3.24 0.003983 0.033724
GO:0045184 establishment of protein localization 6.0% (3/50) 3.24 0.003983 0.033724
GO:0051649 establishment of localization in cell 6.0% (3/50) 3.32 0.00338 0.037324
GO:0046907 intracellular transport 6.0% (3/50) 3.32 0.00338 0.037324
GO:0008270 zinc ion binding 10.0% (5/50) 2.17 0.004983 0.038358
GO:0034062 5'-3' RNA polymerase activity 4.0% (2/50) 4.56 0.003305 0.03997
GO:0097747 RNA polymerase activity 4.0% (2/50) 4.56 0.003305 0.03997
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity 2.0% (1/50) 7.49 0.005563 0.04037
GO:0016423 tRNA (guanine) methyltransferase activity 2.0% (1/50) 7.49 0.005563 0.04037
GO:0051641 cellular localization 6.0% (3/50) 3.26 0.003839 0.040624
GO:0051020 GTPase binding 4.0% (2/50) 4.65 0.002892 0.040814
GO:0006325 chromatin organization 4.0% (2/50) 4.6 0.003095 0.041378
GO:0016593 Cdc73/Paf1 complex 2.0% (1/50) 8.49 0.002785 0.041614
GO:0006354 DNA-templated transcription, elongation 2.0% (1/50) 8.49 0.002785 0.041614
GO:0006368 transcription elongation from RNA polymerase II promoter 2.0% (1/50) 8.49 0.002785 0.041614
GO:0090304 nucleic acid metabolic process 10.0% (5/50) 2.48 0.001996 0.042244
GO:0006139 nucleobase-containing compound metabolic process 10.0% (5/50) 2.09 0.006261 0.044178
GO:0016779 nucleotidyltransferase activity 4.0% (2/50) 3.69 0.010547 0.045406
GO:0019899 enzyme binding 4.0% (2/50) 3.69 0.010547 0.045406
GO:1901360 organic cyclic compound metabolic process 10.0% (5/50) 1.92 0.0102 0.045451
GO:0006473 protein acetylation 2.0% (1/50) 6.68 0.009715 0.045696
GO:0043543 protein acylation 2.0% (1/50) 6.68 0.009715 0.045696
GO:0006401 RNA catabolic process 2.0% (1/50) 6.68 0.009715 0.045696
GO:0071705 nitrogen compound transport 6.0% (3/50) 2.76 0.00994 0.045905
GO:0016831 carboxy-lyase activity 4.0% (2/50) 3.67 0.010913 0.046198
GO:0003968 RNA-directed 5'-3' RNA polymerase activity 2.0% (1/50) 6.49 0.011095 0.046199
GO:0016192 vesicle-mediated transport 4.0% (2/50) 3.72 0.010187 0.046204
GO:0046483 heterocycle metabolic process 10.0% (5/50) 1.99 0.00838 0.04627
GO:0008175 tRNA methyltransferase activity 2.0% (1/50) 7.17 0.006949 0.046446
GO:0033588 Elongator holoenzyme complex 2.0% (1/50) 7.17 0.006949 0.046446
GO:0071702 organic substance transport 6.0% (3/50) 2.69 0.011345 0.046479
GO:0006475 internal protein amino acid acetylation 2.0% (1/50) 6.9 0.008333 0.047033
GO:0018394 peptidyl-lysine acetylation 2.0% (1/50) 6.9 0.008333 0.047033
GO:0016573 histone acetylation 2.0% (1/50) 6.9 0.008333 0.047033
GO:0000956 nuclear-transcribed mRNA catabolic process 2.0% (1/50) 6.9 0.008333 0.047033
GO:0006402 mRNA catabolic process 2.0% (1/50) 6.9 0.008333 0.047033
GO:0002098 tRNA wobble uridine modification 2.0% (1/50) 6.9 0.008333 0.047033
GO:0018393 internal peptidyl-lysine acetylation 2.0% (1/50) 6.9 0.008333 0.047033
GO:0034470 ncRNA processing 4.0% (2/50) 4.73 0.0026 0.047175
GO:0006399 tRNA metabolic process 4.0% (2/50) 3.77 0.009483 0.047228
GO:0032774 RNA biosynthetic process 4.0% (2/50) 3.77 0.009483 0.047228
GO:0006725 cellular aromatic compound metabolic process 10.0% (5/50) 1.97 0.008919 0.048202
GO:0004842 ubiquitin-protein transferase activity 4.0% (2/50) 3.79 0.00931 0.048262
GO:0019787 ubiquitin-like protein transferase activity 4.0% (2/50) 3.79 0.00931 0.048262
GO:0050789 regulation of biological process 10.0% (5/50) 1.84 0.012573 0.048388
GO:0002097 tRNA wobble base modification 2.0% (1/50) 6.32 0.012474 0.048743
GO:0030127 COPII vesicle coat 2.0% (1/50) 6.32 0.012474 0.048743
GO:0030976 thiamine pyrophosphate binding 2.0% (1/50) 6.32 0.012474 0.048743
GO:0006886 intracellular protein transport 6.0% (3/50) 3.47 0.00253 0.049441
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum lycopersicum HCCA clusters Cluster_110 0.021 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_229 0.022 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_232 0.022 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_20 0.022 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_167 0.022 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_59 0.034 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_37 0.022 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_59 0.022 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_84 0.02 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_116 0.023 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_137 0.025 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_167 0.028 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_245 0.02 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_155 0.021 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_177 0.026 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_205 0.022 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_65 0.02 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_74 0.02 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_78 0.026 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_142 0.02 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_147 0.023 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_194 0.021 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_7 0.032 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_114 0.026 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_184 0.021 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_212 0.02 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_250 0.023 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_276 0.03 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_278 0.03 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_286 0.026 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_317 0.024 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_425 0.02 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_443 0.03 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_468 0.033 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_516 0.021 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_25 0.023 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_28 0.025 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_38 0.023 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_116 0.028 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_203 0.021 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0070 0.021 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0130 0.023 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_79 0.02 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_247 0.02 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_8 0.024 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_36 0.02 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_83 0.028 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_107 0.024 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_284 0.02 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_304 0.021 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_47 0.029 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_76 0.026 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_179 0.022 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_56 0.024 Orthogroups_2024-Update Compare
Sequences (50) (download table)

InterPro Domains

GO Terms

Family Terms