Coexpression cluster: Cluster_46 (HCCA clusters)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0051172 negative regulation of nitrogen compound metabolic process 4.0% (2/50) 6.99 0.000114 0.00498
GO:0031324 negative regulation of cellular metabolic process 4.0% (2/50) 6.99 0.000114 0.00498
GO:2000113 negative regulation of cellular macromolecule biosynthetic process 4.0% (2/50) 7.22 8.2e-05 0.005355
GO:0031327 negative regulation of cellular biosynthetic process 4.0% (2/50) 7.22 8.2e-05 0.005355
GO:0010558 negative regulation of macromolecule biosynthetic process 4.0% (2/50) 7.22 8.2e-05 0.005355
GO:0009890 negative regulation of biosynthetic process 4.0% (2/50) 7.22 8.2e-05 0.005355
GO:0008150 biological_process 38.0% (19/50) 1.22 0.00019 0.007077
GO:0044275 cellular carbohydrate catabolic process 2.0% (1/50) 10.31 0.000788 0.008938
GO:2000104 negative regulation of DNA-dependent DNA replication 2.0% (1/50) 10.31 0.000788 0.008938
GO:0090329 regulation of DNA-dependent DNA replication 2.0% (1/50) 10.31 0.000788 0.008938
GO:1901616 organic hydroxy compound catabolic process 2.0% (1/50) 10.31 0.000788 0.008938
GO:0048478 replication fork protection 2.0% (1/50) 10.31 0.000788 0.008938
GO:0045005 DNA-dependent DNA replication maintenance of fidelity 2.0% (1/50) 10.31 0.000788 0.008938
GO:0050113 inositol oxygenase activity 2.0% (1/50) 10.31 0.000788 0.008938
GO:0046174 polyol catabolic process 2.0% (1/50) 10.31 0.000788 0.008938
GO:0046164 alcohol catabolic process 2.0% (1/50) 10.31 0.000788 0.008938
GO:0008156 negative regulation of DNA replication 2.0% (1/50) 10.31 0.000788 0.008938
GO:0051053 negative regulation of DNA metabolic process 2.0% (1/50) 10.31 0.000788 0.008938
GO:0019310 inositol catabolic process 2.0% (1/50) 10.31 0.000788 0.008938
GO:0045934 negative regulation of nucleobase-containing compound metabolic process 2.0% (1/50) 9.31 0.001575 0.011743
GO:0050308 sugar-phosphatase activity 2.0% (1/50) 9.31 0.001575 0.011743
GO:0050307 sucrose-phosphate phosphatase activity 2.0% (1/50) 9.31 0.001575 0.011743
GO:0019203 carbohydrate phosphatase activity 2.0% (1/50) 9.31 0.001575 0.011743
GO:1903046 meiotic cell cycle process 2.0% (1/50) 9.31 0.001575 0.011743
GO:0005986 sucrose biosynthetic process 2.0% (1/50) 9.31 0.001575 0.011743
GO:0045132 meiotic chromosome segregation 2.0% (1/50) 9.31 0.001575 0.011743
GO:0098813 nuclear chromosome segregation 2.0% (1/50) 9.31 0.001575 0.011743
GO:0043169 cation binding 12.0% (6/50) 2.34 0.001142 0.011926
GO:0046872 metal ion binding 12.0% (6/50) 2.35 0.001112 0.012089
GO:0050789 regulation of biological process 12.0% (6/50) 2.23 0.001693 0.012271
GO:0009733 response to auxin 4.0% (2/50) 4.97 0.001893 0.013354
GO:0048519 negative regulation of biological process 4.0% (2/50) 5.22 0.00134 0.013449
GO:0065007 biological regulation 12.0% (6/50) 2.18 0.001977 0.013579
GO:0044262 cellular carbohydrate metabolic process 6.0% (3/50) 4.32 0.000474 0.013733
GO:0006275 regulation of DNA replication 2.0% (1/50) 8.73 0.002361 0.014006
GO:0000775 chromosome, centromeric region 2.0% (1/50) 8.73 0.002361 0.014006
GO:0031323 regulation of cellular metabolic process 10.0% (5/50) 2.4 0.002526 0.01403
GO:0051171 regulation of nitrogen compound metabolic process 10.0% (5/50) 2.4 0.002499 0.014181
GO:0080090 regulation of primary metabolic process 10.0% (5/50) 2.4 0.002499 0.014181
GO:0031326 regulation of cellular biosynthetic process 10.0% (5/50) 2.43 0.002333 0.014498
GO:0009889 regulation of biosynthetic process 10.0% (5/50) 2.43 0.002333 0.014498
GO:0010556 regulation of macromolecule biosynthetic process 10.0% (5/50) 2.43 0.002333 0.014498
GO:2000112 regulation of cellular macromolecule biosynthetic process 10.0% (5/50) 2.43 0.002333 0.014498
GO:0009892 negative regulation of metabolic process 4.0% (2/50) 5.79 0.000615 0.014604
GO:0010605 negative regulation of macromolecule metabolic process 4.0% (2/50) 5.79 0.000615 0.014604
GO:0050794 regulation of cellular process 12.0% (6/50) 2.26 0.001516 0.014656
GO:0019222 regulation of metabolic process 10.0% (5/50) 2.37 0.002789 0.014856
GO:0060255 regulation of macromolecule metabolic process 10.0% (5/50) 2.37 0.002741 0.014903
GO:0048523 negative regulation of cellular process 4.0% (2/50) 5.99 0.000465 0.015179
GO:0003896 DNA primase activity 2.0% (1/50) 8.31 0.003147 0.015795
GO:0006269 DNA replication, synthesis of RNA primer 2.0% (1/50) 8.31 0.003147 0.015795
GO:0007059 chromosome segregation 2.0% (1/50) 8.31 0.003147 0.015795
GO:0098687 chromosomal region 2.0% (1/50) 7.99 0.003932 0.019364
GO:0009719 response to endogenous stimulus 4.0% (2/50) 4.34 0.004429 0.020282
GO:0010033 response to organic substance 4.0% (2/50) 4.34 0.004429 0.020282
GO:0009725 response to hormone 4.0% (2/50) 4.34 0.004429 0.020282
GO:0003674 molecular_function 42.0% (21/50) 0.79 0.00439 0.02122
GO:0034637 cellular carbohydrate biosynthetic process 4.0% (2/50) 4.28 0.004852 0.021834
GO:0051052 regulation of DNA metabolic process 2.0% (1/50) 7.5 0.005501 0.023157
GO:0006020 inositol metabolic process 2.0% (1/50) 7.5 0.005501 0.023157
GO:0042221 response to chemical 4.0% (2/50) 4.21 0.005293 0.023413
GO:0046914 transition metal ion binding 8.0% (4/50) 2.49 0.005665 0.023468
GO:0044464 cell part 12.0% (6/50) 1.89 0.005436 0.023648
GO:0016051 carbohydrate biosynthetic process 4.0% (2/50) 4.11 0.006066 0.024738
GO:0009987 cellular process 20.0% (10/50) 1.29 0.006452 0.025908
GO:0005634 nucleus 6.0% (3/50) 2.9 0.00772 0.03053
GO:0050896 response to stimulus 6.0% (3/50) 2.88 0.007969 0.031044
GO:0006259 DNA metabolic process 4.0% (2/50) 3.75 0.009834 0.037746
GO:0043227 membrane-bounded organelle 6.0% (3/50) 2.72 0.01082 0.040344
GO:0043231 intracellular membrane-bounded organelle 6.0% (3/50) 2.72 0.01082 0.040344
GO:0030597 RNA glycosylase activity 2.0% (1/50) 6.4 0.011751 0.041446
GO:0030598 rRNA N-glycosylase activity 2.0% (1/50) 6.4 0.011751 0.041446
GO:0017148 negative regulation of translation 2.0% (1/50) 6.4 0.011751 0.041446
GO:0034249 negative regulation of cellular amide metabolic process 2.0% (1/50) 6.4 0.011751 0.041446
GO:0051248 negative regulation of protein metabolic process 2.0% (1/50) 6.14 0.014085 0.043764
GO:0034248 regulation of cellular amide metabolic process 2.0% (1/50) 6.14 0.014085 0.043764
GO:0032269 negative regulation of cellular protein metabolic process 2.0% (1/50) 6.14 0.014085 0.043764
GO:0010608 posttranscriptional regulation of gene expression 2.0% (1/50) 6.14 0.014085 0.043764
GO:0006417 regulation of translation 2.0% (1/50) 6.14 0.014085 0.043764
GO:0003700 DNA-binding transcription factor activity 6.0% (3/50) 2.56 0.014369 0.044122
GO:0019219 regulation of nucleobase-containing compound metabolic process 8.0% (4/50) 2.12 0.013362 0.044144
GO:0140102 catalytic activity, acting on a rRNA 2.0% (1/50) 6.22 0.013308 0.044529
GO:0019751 polyol metabolic process 2.0% (1/50) 6.22 0.013308 0.044529
GO:0006066 alcohol metabolic process 2.0% (1/50) 6.22 0.013308 0.044529
GO:0010468 regulation of gene expression 8.0% (4/50) 2.08 0.014826 0.044996
GO:0032774 RNA biosynthetic process 4.0% (2/50) 3.54 0.013017 0.0453
GO:0003843 1,3-beta-D-glucan synthase activity 2.0% (1/50) 5.92 0.016414 0.045574
GO:0006075 (1->3)-beta-D-glucan biosynthetic process 2.0% (1/50) 5.92 0.016414 0.045574
GO:0000148 1,3-beta-D-glucan synthase complex 2.0% (1/50) 5.92 0.016414 0.045574
GO:0006074 (1->3)-beta-D-glucan metabolic process 2.0% (1/50) 5.92 0.016414 0.045574
GO:0022402 cell cycle process 2.0% (1/50) 5.92 0.016414 0.045574
GO:0140110 transcription regulator activity 6.0% (3/50) 2.48 0.016716 0.045924
GO:0007010 cytoskeleton organization 2.0% (1/50) 5.99 0.015638 0.046381
GO:1901615 organic hydroxy compound metabolic process 2.0% (1/50) 5.99 0.015638 0.046381
GO:0016757 transferase activity, transferring glycosyl groups 6.0% (3/50) 2.51 0.01589 0.046599
GO:0005789 endoplasmic reticulum membrane 2.0% (1/50) 5.85 0.017189 0.046731
GO:0044424 intracellular part 10.0% (5/50) 1.72 0.017589 0.046845
GO:0005975 carbohydrate metabolic process 6.0% (3/50) 2.45 0.017499 0.047084
GO:0044282 small molecule catabolic process 2.0% (1/50) 5.79 0.017963 0.047357
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum lycopersicum HCCA clusters Cluster_48 0.02 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_282 0.02 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_86 0.02 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_95 0.021 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_357 0.021 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_403 0.02 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_1 0.022 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_23 0.028 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_68 0.021 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_73 0.025 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_88 0.02 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_100 0.02 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_113 0.02 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_225 0.02 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_227 0.021 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_96 0.02 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_123 0.02 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_14 0.02 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_115 0.026 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_119 0.025 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_181 0.02 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_242 0.024 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_203 0.028 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_296 0.02 Orthogroups_2024-Update Compare
Pseudotsuga menziesii HCCA clusters Cluster_24 0.025 Orthogroups_2024-Update Compare
Pseudotsuga menziesii HCCA clusters Cluster_47 0.022 Orthogroups_2024-Update Compare
Pseudotsuga menziesii HCCA clusters Cluster_123 0.019 Orthogroups_2024-Update Compare
Pseudotsuga menziesii HCCA clusters Cluster_222 0.029 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_3 0.019 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_15 0.028 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_73 0.022 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_130 0.022 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_158 0.027 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_182 0.021 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_225 0.034 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_242 0.02 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_256 0.031 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_107 0.027 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_114 0.02 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_142 0.02 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_209 0.02 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_251 0.022 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_344 0.031 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_396 0.024 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_428 0.022 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_494 0.022 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_499 0.021 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_518 0.02 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_49 0.031 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_156 0.021 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_2 0.022 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_22 0.021 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_29 0.02 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_179 0.021 Orthogroups_2024-Update Compare
Oryza sativa HCCA clusters cluster_0073 0.021 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0023 0.025 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0045 0.024 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0147 0.021 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_99 0.019 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_185 0.029 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_204 0.021 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_209 0.022 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_317 0.02 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_352 0.02 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_383 0.032 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_394 0.02 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_33 0.022 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_147 0.021 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_153 0.028 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_221 0.02 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_223 0.022 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_39 0.021 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_230 0.022 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_10 0.024 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_17 0.022 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_88 0.025 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_118 0.023 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_126 0.021 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_253 0.02 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_254 0.02 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_114 0.023 Orthogroups_2024-Update Compare
Sequences (50) (download table)

InterPro Domains

GO Terms

Family Terms