- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thaliana (sp|o65567|pp342_arath : 519.0)
Gene families : OG_42_0007361 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007361_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Marchantia polymorpha: Mp1g07710.1 | |
| Cluster | HCAA Clusters: Cluster_58 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| GRMZM2G103250 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003747 | translation release factor activity | IEP | Predicted GO |
| MF | GO:0003919 | FMN adenylyltransferase activity | IEP | Predicted GO |
| MF | GO:0004425 | indole-3-glycerol-phosphate synthase activity | IEP | Predicted GO |
| MF | GO:0004817 | cysteine-tRNA ligase activity | IEP | Predicted GO |
| BP | GO:0006415 | translational termination | IEP | Predicted GO |
| BP | GO:0006423 | cysteinyl-tRNA aminoacylation | IEP | Predicted GO |
| BP | GO:0006766 | vitamin metabolic process | IEP | Predicted GO |
| BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | Predicted GO |
| BP | GO:0006771 | riboflavin metabolic process | IEP | Predicted GO |
| MF | GO:0008079 | translation termination factor activity | IEP | Predicted GO |
| BP | GO:0009110 | vitamin biosynthetic process | IEP | Predicted GO |
| BP | GO:0009231 | riboflavin biosynthetic process | IEP | Predicted GO |
| BP | GO:0009235 | cobalamin metabolic process | IEP | Predicted GO |
| BP | GO:0009236 | cobalamin biosynthetic process | IEP | Predicted GO |
| BP | GO:0010207 | photosystem II assembly | IEP | Predicted GO |
| MF | GO:0016852 | sirohydrochlorin cobaltochelatase activity | IEP | Predicted GO |
| MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Predicted GO |
| BP | GO:0022411 | cellular component disassembly | IEP | Predicted GO |
| BP | GO:0032984 | protein-containing complex disassembly | IEP | Predicted GO |
| BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | Predicted GO |
| BP | GO:0042726 | flavin-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | Predicted GO |
| BP | GO:0043624 | cellular protein complex disassembly | IEP | Predicted GO |
| BP | GO:0043933 | protein-containing complex subunit organization | IEP | Predicted GO |
| MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | Predicted GO |
| MF | GO:0070566 | adenylyltransferase activity | IEP | Predicted GO |
| MF | GO:0070567 | cytidylyltransferase activity | IEP | Predicted GO |
| BP | GO:0071586 | CAAX-box protein processing | IEP | Predicted GO |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 843 | 872 |
| IPR002885 | Pentatricopeptide_repeat | 353 | 381 |
| IPR002885 | Pentatricopeptide_repeat | 423 | 452 |
| IPR002885 | Pentatricopeptide_repeat | 807 | 837 |
| IPR002885 | Pentatricopeptide_repeat | 774 | 800 |
| IPR002885 | Pentatricopeptide_repeat | 667 | 690 |
| IPR002885 | Pentatricopeptide_repeat | 393 | 415 |
| IPR002885 | Pentatricopeptide_repeat | 635 | 662 |
| IPR002885 | Pentatricopeptide_repeat | 875 | 921 |
| IPR033443 | PPR_long | 456 | 610 |
| No external refs found! |