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  5. Mp1g09900.1

Mp1g09900.1


Description : scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex


Gene families : OG_42_0002266 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002266_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha: Mp1g09900.1
Cluster HCAA Clusters: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
438035 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.03 Orthogroups_2024-Update
A4A49_07970 No alias sac3 family protein b 0.02 Orthogroups_2024-Update
At3g06290 No alias SAC3 family protein B [Source:UniProtKB/Swiss-Prot;Acc:F4JAU2] 0.02 Orthogroups_2024-Update
Bradi1g19627 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.03 Orthogroups_2024-Update
Brara.G01631.1 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.02 Orthogroups_2024-Update
Glyma.13G211900 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.03 Orthogroups_2024-Update
HORVU2Hr1G025040.28 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 Orthogroups_2024-Update
Sobic.002G397500.2 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.02 Orthogroups_2024-Update
Solyc12g035670 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family (AHRD V3.3 *** AT3G06290.3) 0.02 Orthogroups_2024-Update
evm.model.tig00001278.20 No alias (at3g54380 : 83.6) SAC3/GANP/Nin1/mts3/eIF-3 p25 family;... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP Predicted GO
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006366 transcription by RNA polymerase II IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR031907 MCM3AP_GANP 608 955
IPR005062 SAC3/GANP/THP3 48 347
No external refs found!