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  5. Mp2g19020.1

Mp2g19020.1


Description : dual-specificity tRNA/rRNA pseudouridine synthase (RluA)


Gene families : OG_42_0003434 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003434_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha: Mp2g19020.1
Cluster HCAA Clusters: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
LOC_Os09g01620 No alias RNA pseudouridine synthase, putative, expressed 0.02 Orthogroups_2024-Update
Sopen01g049770 No alias RNA pseudouridylate synthase 0.02 Orthogroups_2024-Update
evm.model.tig00000025.21 No alias (at3g19440 : 138.0) Pseudouridine synthase family... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA 16Dec
MF GO:0003723 RNA binding IEA 16Dec
BP GO:0009451 RNA modification IEA 16Dec
MF GO:0009982 pseudouridine synthase activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004181 metallocarboxypeptidase activity IEP Predicted GO
MF GO:0004484 mRNA guanylyltransferase activity IEP Predicted GO
MF GO:0004797 thymidine kinase activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006370 7-methylguanosine mRNA capping IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0008192 RNA guanylyltransferase activity IEP Predicted GO
MF GO:0008235 metalloexopeptidase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009452 7-methylguanosine RNA capping IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0019136 deoxynucleoside kinase activity IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
MF GO:0019206 nucleoside kinase activity IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
BP GO:0036260 RNA capping IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0070568 guanylyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR006145 PsdUridine_synth_RsuA/RluD 221 392
No external refs found!