Description : component RPL4 of LSU proteome component
Gene families : OG_42_0001916 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001916_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Marchantia polymorpha: Mp4g20310.1 | |
Cluster | HCAA Clusters: Cluster_31 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
166994 | No alias | Ribosomal protein L4/L1 family | 0.11 | Orthogroups_2024-Update | |
At3g09630 | No alias | 60S ribosomal protein L4-1... | 0.02 | Orthogroups_2024-Update | |
Bradi1g05510 | No alias | Ribosomal protein L4/L1 family | 0.08 | Orthogroups_2024-Update | |
Bradi1g55510 | No alias | Ribosomal protein L4/L1 family | 0.08 | Orthogroups_2024-Update | |
Brara.A03522.1 | No alias | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.13 | Orthogroups_2024-Update | |
Brara.C00088.1 | No alias | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
Brara.C03264.1 | No alias | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
Brara.E03076.1 | No alias | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.13 | Orthogroups_2024-Update | |
Brara.J02849.1 | No alias | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.08 | Orthogroups_2024-Update | |
Cre09.g397697 | No alias | Ribosomal protein L4/L1 family | 0.06 | Orthogroups_2024-Update | |
GRMZM2G007695 | No alias | Ribosomal protein L4/L1 family | 0.05 | Orthogroups_2024-Update | |
GRMZM2G100403 | No alias | Ribosomal protein L4/L1 family | 0.05 | Orthogroups_2024-Update | |
Glyma.10G048600 | No alias | Ribosomal protein L4/L1 family | 0.09 | Orthogroups_2024-Update | |
Glyma.13G136400 | No alias | Ribosomal protein L4/L1 family | 0.06 | Orthogroups_2024-Update | |
HORVU4Hr1G075710.1 | No alias | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.09 | Orthogroups_2024-Update | |
HORVU5Hr1G105870.1 | No alias | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.06 | Orthogroups_2024-Update | |
Kfl00456_0100 | kfl00456_0100_v1.1 | (at3g09630 : 489.0) Ribosomal protein L4/L1 family;... | 0.05 | Orthogroups_2024-Update | |
PSME_00003145-RA | No alias | (at3g09630 : 579.0) Ribosomal protein L4/L1 family;... | 0.03 | Orthogroups_2024-Update | |
PSME_00003150-RA | No alias | (at3g09630 : 531.0) Ribosomal protein L4/L1 family;... | 0.03 | Orthogroups_2024-Update | |
Potri.T159800 | No alias | Ribosomal protein L4/L1 family | 0.04 | Orthogroups_2024-Update | |
Pp1s10_102V6 | No alias | 60s ribosomal protein l4 | 0.09 | Orthogroups_2024-Update | |
Pp1s18_113V6 | No alias | 60s ribosomal protein l4 | 0.13 | Orthogroups_2024-Update | |
Pp1s40_305V6 | No alias | 60s ribosomal protein l4 | 0.15 | Orthogroups_2024-Update | |
Seita.2G055300.1 | No alias | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.1 | Orthogroups_2024-Update | |
Seita.9G056000.1 | No alias | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.03 | Orthogroups_2024-Update | |
Sobic.001G057300.1 | No alias | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.07 | Orthogroups_2024-Update | |
Sobic.002G054000.1 | No alias | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.08 | Orthogroups_2024-Update | |
Solyc09g007250 | No alias | 60S ribosomal protein L4 (AHRD V3.3 *** RL4_PRUAR) | 0.13 | Orthogroups_2024-Update | |
Solyc10g086010 | No alias | 60S ribosomal L4 (AHRD V3.3 *** A0A0B0NGW3_GOSAR) | 0.07 | Orthogroups_2024-Update | |
Sopen09g002120 | No alias | Ribosomal protein L4/L1 family | 0.08 | Orthogroups_2024-Update | |
Sopen10g033800 | No alias | Ribosomal protein L4/L1 family | 0.14 | Orthogroups_2024-Update | |
Sopen10g035380 | No alias | Ribosomal protein L4/L1 family | 0.12 | Orthogroups_2024-Update | |
evm.model.contig_2049.5 | No alias | (at3g09630 : 394.0) Ribosomal protein L4/L1 family;... | 0.02 | Orthogroups_2024-Update | |
evm.model.tig00022075.53 | No alias | (at3g09630 : 404.0) Ribosomal protein L4/L1 family;... | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | 16Dec |
CC | GO:0005840 | ribosome | IEA | 16Dec |
BP | GO:0006412 | translation | IEA | 16Dec |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003743 | translation initiation factor activity | IEP | Predicted GO |
MF | GO:0004640 | phosphoribosylanthranilate isomerase activity | IEP | Predicted GO |
MF | GO:0005488 | binding | IEP | Predicted GO |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Predicted GO |
BP | GO:0006568 | tryptophan metabolic process | IEP | Predicted GO |
BP | GO:0006576 | cellular biogenic amine metabolic process | IEP | Predicted GO |
BP | GO:0006586 | indolalkylamine metabolic process | IEP | Predicted GO |
BP | GO:0006766 | vitamin metabolic process | IEP | Predicted GO |
BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | Predicted GO |
MF | GO:0008097 | 5S rRNA binding | IEP | Predicted GO |
BP | GO:0009072 | aromatic amino acid family metabolic process | IEP | Predicted GO |
BP | GO:0009110 | vitamin biosynthetic process | IEP | Predicted GO |
BP | GO:0009235 | cobalamin metabolic process | IEP | Predicted GO |
BP | GO:0009236 | cobalamin biosynthetic process | IEP | Predicted GO |
BP | GO:0009308 | amine metabolic process | IEP | Predicted GO |
MF | GO:0016860 | intramolecular oxidoreductase activity | IEP | Predicted GO |
MF | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses | IEP | Predicted GO |
MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
CC | GO:0031011 | Ino80 complex | IEP | Predicted GO |
BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Predicted GO |
BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | Predicted GO |
CC | GO:0033202 | DNA helicase complex | IEP | Predicted GO |
BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | Predicted GO |
BP | GO:0042430 | indole-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
BP | GO:0044106 | cellular amine metabolic process | IEP | Predicted GO |
CC | GO:0044454 | nuclear chromosome part | IEP | Predicted GO |
CC | GO:0070603 | SWI/SNF superfamily-type complex | IEP | Predicted GO |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | Predicted GO |
MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
CC | GO:0097346 | INO80-type complex | IEP | Predicted GO |
MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
CC | GO:1904949 | ATPase complex | IEP | Predicted GO |
No external refs found! |