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  5. Mp4g22180.1

Mp4g22180.1


Description : alpha-class expansin


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha: Mp4g22180.1
Cluster HCAA Clusters: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
At1g62980 No alias Expansin-A18 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ07] 0.02 Orthogroups_2024-Update
At3g29030 No alias At3g29030 [Source:UniProtKB/TrEMBL;Acc:Q1ECM3] 0.02 Orthogroups_2024-Update
Brara.B00044.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Brara.J02891.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
MA_10020g0010 No alias (at1g26770 : 369.0) Encodes an expansin. Naming... 0.02 Orthogroups_2024-Update
MA_10425823g0010 No alias (q852a1|expa7_orysa : 372.0) Expansin-A7 precursor... 0.02 Orthogroups_2024-Update
PSME_00039952-RA No alias (at5g05290 : 224.0) Encodes an expansin. Naming... 0.02 Orthogroups_2024-Update
Potri.017G140000 No alias expansin A13 0.02 Orthogroups_2024-Update
Sopen08g003710 No alias Rare lipoprotein A (RlpA)-like double-psi beta-barrel 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 161 236
IPR009009 RlpA-like_DPBB 69 149
No external refs found!