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Description : Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103XYK3_CYNCS)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc03g114660 | |
| Cluster | HCCA clusters: Cluster_125 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_23672 | No alias | pentatricopeptide repeat-containing protein, mitochondrial | 0.03 | Orthogroups_2024-Update | |
| At4g33170 | No alias | Pentatricopeptide repeat-containing protein At4g33170... | 0.02 | Orthogroups_2024-Update | |
| At5g03800 | No alias | Glycosyltransferase (Fragment)... | 0.03 | Orthogroups_2024-Update | |
| Bradi1g59070 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Brara.A03095.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Brara.G01460.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Brara.G03498.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.J00664.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Glyma.01G048100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.01G176700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.05G008800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.06G057900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.13G220450 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.16G161800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| HORVU1Hr1G063370.1 | No alias | RNA editing factor *(MEF32) | 0.03 | Orthogroups_2024-Update | |
| HORVU5Hr1G047290.1 | No alias | Unknown function | 0.01 | Orthogroups_2024-Update | |
| HORVU5Hr1G079090.7 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| LOC_Os02g50280 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os03g04390 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os04g43430 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| MA_100519g0010 | No alias | (at2g27610 : 631.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
| MA_43615g0010 | No alias | (at1g11290 : 687.0) Pentatricopeptide Repeat Protein... | 0.02 | Orthogroups_2024-Update | |
| MA_81514g0010 | No alias | (at1g11290 : 694.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
| MA_9360929g0010 | No alias | (at4g13650 : 669.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
| MA_94165g0010 | No alias | (at1g11290 : 612.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
| PSME_00011508-RA | No alias | (at2g27610 : 744.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| Potri.006G001200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.012G108000 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.014G029500 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.015G047600 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Seita.2G109100.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.3G227100.1 | No alias | RNA editing factor *(MEF21) | 0.01 | Orthogroups_2024-Update | |
| Seita.5G361000.1 | No alias | RNA editing factor *(MEF10) | 0.02 | Orthogroups_2024-Update | |
| Sobic.010G181000.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Solyc07g008890 | No alias | Pentatricopeptide repeat superfamily protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
| Sopen01g041720 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen03g033730 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update | |
| Sopen03g038830 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen04g022860 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen08g024790 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000062 | fatty-acyl-CoA binding | IEP | Predicted GO |
| CC | GO:0000159 | protein phosphatase type 2A complex | IEP | Predicted GO |
| BP | GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | IEP | Predicted GO |
| MF | GO:0003690 | double-stranded DNA binding | IEP | Predicted GO |
| MF | GO:0003872 | 6-phosphofructokinase activity | IEP | Predicted GO |
| MF | GO:0004061 | arylformamidase activity | IEP | Predicted GO |
| MF | GO:0004640 | phosphoribosylanthranilate isomerase activity | IEP | Predicted GO |
| BP | GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | IEP | Predicted GO |
| BP | GO:0006568 | tryptophan metabolic process | IEP | Predicted GO |
| BP | GO:0006569 | tryptophan catabolic process | IEP | Predicted GO |
| BP | GO:0006576 | cellular biogenic amine metabolic process | IEP | Predicted GO |
| BP | GO:0006586 | indolalkylamine metabolic process | IEP | Predicted GO |
| BP | GO:0006766 | vitamin metabolic process | IEP | Predicted GO |
| BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | Predicted GO |
| BP | GO:0006771 | riboflavin metabolic process | IEP | Predicted GO |
| CC | GO:0008287 | protein serine/threonine phosphatase complex | IEP | Predicted GO |
| MF | GO:0008443 | phosphofructokinase activity | IEP | Predicted GO |
| MF | GO:0008897 | holo-[acyl-carrier-protein] synthase activity | IEP | Predicted GO |
| BP | GO:0009063 | cellular amino acid catabolic process | IEP | Predicted GO |
| BP | GO:0009072 | aromatic amino acid family metabolic process | IEP | Predicted GO |
| BP | GO:0009074 | aromatic amino acid family catabolic process | IEP | Predicted GO |
| BP | GO:0009110 | vitamin biosynthetic process | IEP | Predicted GO |
| BP | GO:0009231 | riboflavin biosynthetic process | IEP | Predicted GO |
| BP | GO:0009308 | amine metabolic process | IEP | Predicted GO |
| BP | GO:0009310 | amine catabolic process | IEP | Predicted GO |
| CC | GO:0009349 | riboflavin synthase complex | IEP | Predicted GO |
| CC | GO:0015934 | large ribosomal subunit | IEP | Predicted GO |
| BP | GO:0016054 | organic acid catabolic process | IEP | Predicted GO |
| MF | GO:0016780 | phosphotransferase activity, for other substituted phosphate groups | IEP | Predicted GO |
| MF | GO:0016811 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | IEP | Predicted GO |
| MF | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses | IEP | Predicted GO |
| MF | GO:0019200 | carbohydrate kinase activity | IEP | Predicted GO |
| MF | GO:0019208 | phosphatase regulator activity | IEP | Predicted GO |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | Predicted GO |
| BP | GO:0019441 | tryptophan catabolic process to kynurenine | IEP | Predicted GO |
| MF | GO:0019888 | protein phosphatase regulator activity | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0042180 | cellular ketone metabolic process | IEP | Predicted GO |
| BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | Predicted GO |
| BP | GO:0042402 | cellular biogenic amine catabolic process | IEP | Predicted GO |
| BP | GO:0042430 | indole-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0042436 | indole-containing compound catabolic process | IEP | Predicted GO |
| BP | GO:0042537 | benzene-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0042726 | flavin-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | Predicted GO |
| BP | GO:0044106 | cellular amine metabolic process | IEP | Predicted GO |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | Predicted GO |
| CC | GO:0044391 | ribosomal subunit | IEP | Predicted GO |
| BP | GO:0046218 | indolalkylamine catabolic process | IEP | Predicted GO |
| BP | GO:0046395 | carboxylic acid catabolic process | IEP | Predicted GO |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
| BP | GO:0046700 | heterocycle catabolic process | IEP | Predicted GO |
| MF | GO:0050662 | coenzyme binding | IEP | Predicted GO |
| BP | GO:0070189 | kynurenine metabolic process | IEP | Predicted GO |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | Predicted GO |
| MF | GO:1901567 | fatty acid derivative binding | IEP | Predicted GO |
| BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Predicted GO |
| BP | GO:1901606 | alpha-amino acid catabolic process | IEP | Predicted GO |
| MF | GO:1901681 | sulfur compound binding | IEP | Predicted GO |
| CC | GO:1902494 | catalytic complex | IEP | Predicted GO |
| CC | GO:1903293 | phosphatase complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 184 | 207 |
| IPR002885 | Pentatricopeptide_repeat | 256 | 282 |
| IPR002885 | Pentatricopeptide_repeat | 284 | 307 |
| IPR002885 | Pentatricopeptide_repeat | 387 | 414 |
| IPR002885 | Pentatricopeptide_repeat | 765 | 789 |
| IPR002885 | Pentatricopeptide_repeat | 359 | 380 |
| IPR002885 | Pentatricopeptide_repeat | 588 | 635 |
| IPR002885 | Pentatricopeptide_repeat | 488 | 534 |
| IPR002885 | Pentatricopeptide_repeat | 689 | 736 |
| No external refs found! |