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  5. Mp8g10290.1

Mp8g10290.1


Description : DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana (sp|q9fft9|rh32_arath : 623.0)


Gene families : OG_42_0000879 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000879_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha: Mp8g10290.1
Cluster HCAA Clusters: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
Bradi4g41160 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update
Brara.C03695.1 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway 0.03 Orthogroups_2024-Update
Brara.E02336.1 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway 0.03 Orthogroups_2024-Update
Cre03.g156150 No alias DEA(D/H)-box RNA helicase family protein 0.05 Orthogroups_2024-Update
Cre07.g314900 No alias P-loop containing nucleoside triphosphate hydrolases... 0.05 Orthogroups_2024-Update
Glyma.04G145400 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update
HORVU1Hr1G004510.5 No alias Unknown function 0.03 Orthogroups_2024-Update
Kfl00121_0050 kfl00121_0050_v1.1 (at5g54910 : 607.0) DEA(D/H)-box RNA helicase family... 0.03 Orthogroups_2024-Update
Kfl00630_0030 kfl00630_0030_v1.... (at3g18600 : 568.0) P-loop containing nucleoside... 0.06 Orthogroups_2024-Update
Potri.001G250700 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
Potri.001G423300 No alias DEA(D/H)-box RNA helicase family protein 0.02 Orthogroups_2024-Update
Potri.009G045300 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
Seita.2G332500.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.001G051500.1 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway 0.02 Orthogroups_2024-Update
Sopen03g033470 No alias DEAD/DEAH box helicase 0.02 Orthogroups_2024-Update
Sopen07g032720 No alias DEAD/DEAH box helicase 0.02 Orthogroups_2024-Update
evm.model.tig00000441.11 No alias (at3g18600 : 300.0) P-loop containing nucleoside... 0.02 Orthogroups_2024-Update
evm.model.tig00000441.12 No alias (at5g65900 : 171.0) DEA(D/H)-box RNA helicase family... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003855 3-dehydroquinate dehydratase activity IEP Predicted GO
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006817 phosphate ion transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
InterPro domains Description Start Stop
IPR025313 DUF4217 478 536
IPR001650 Helicase_C 326 435
IPR011545 DEAD/DEAH_box_helicase_dom 118 289
No external refs found!