At5g52570

Description : Beta-carotene 3-hydroxylase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LTG0]

Gene families : OG_42_0002239 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002239_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Arabidopsis release: At5g52570
Cluster	HCCA clusters: Cluster_9

Target	Alias	Description	ECC score	Gene Family Method
A4A49_26103	No alias	beta-carotene hydroxylase 2, chloroplastic	0.05	Orthogroups_2024-Update
Bradi1g76870	No alias	beta-hydroxylase 1	0.03	Orthogroups_2024-Update
Bradi5g19130	No alias	beta-hydroxylase 1	0.03	Orthogroups_2024-Update
Brara.A01566.1	No alias	carotenoid beta ring hydroxylase	0.07	Orthogroups_2024-Update
Brara.K00180.1	No alias	carotenoid beta ring hydroxylase	0.06	Orthogroups_2024-Update
Cre04.g215050	No alias	beta-hydroxylase 1	0.02	Orthogroups_2024-Update
Glyma.09G132200	No alias	beta-hydroxylase 1	0.04	Orthogroups_2024-Update
Glyma.16G179100	No alias	beta-hydroxylase 1	0.06	Orthogroups_2024-Update
Glyma.20G162600	No alias	beta-hydroxylase 1	0.04	Orthogroups_2024-Update
LOC_Os04g48880	No alias	fatty acid hydroxylase, putative, expressed	0.06	Orthogroups_2024-Update
LOC_Os10g38940	No alias	fatty acid hydroxylase, putative, expressed	0.03	Orthogroups_2024-Update
Mp2g08670.1	No alias	carotenoid beta ring hydroxylase	0.03	Orthogroups_2024-Update
Potri.017G145700	No alias	beta-hydroxylase 1	0.03	Orthogroups_2024-Update
Pp1s19_96V6	No alias	beta-carotene hydroxylase	0.05	Orthogroups_2024-Update
Pp1s20_24V6	No alias	beta-carotene hydroxylase	0.02	Orthogroups_2024-Update
Sobic.006G188200.2	No alias	carotenoid beta ring hydroxylase	0.06	Orthogroups_2024-Update
Solyc03g007960	No alias	beta-carotene hydroxylase-2	0.03	Orthogroups_2024-Update
Solyc06g036260	No alias	beta-carotene hydroxylase-1	0.09	Orthogroups_2024-Update
Sopen06g012040	No alias	Fatty acid hydroxylase superfamily	0.06	Orthogroups_2024-Update
evm.model.tig00001187.17	No alias	(at5g52570 : 113.0) Converts β-carotene to...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005506	iron ion binding	IEA	InterProScan predictions
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	IEA	InterProScan predictions
BP	GO:0009058	biosynthetic process	None	Extended
MF	GO:0016491	oxidoreductase activity	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0055114	oxidation-reduction process	IEA	InterProScan predictions
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004014	adenosylmethionine decarboxylase activity	IEP	Predicted GO
MF	GO:0004506	squalene monooxygenase activity	IEP	Predicted GO
MF	GO:0005215	transporter activity	IEP	Predicted GO
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Predicted GO
BP	GO:0006595	polyamine metabolic process	IEP	Predicted GO
BP	GO:0006596	polyamine biosynthetic process	IEP	Predicted GO
BP	GO:0006597	spermine biosynthetic process	IEP	Predicted GO
BP	GO:0006810	transport	IEP	Predicted GO
BP	GO:0008215	spermine metabolic process	IEP	Predicted GO
BP	GO:0008216	spermidine metabolic process	IEP	Predicted GO
MF	GO:0008270	zinc ion binding	IEP	Predicted GO
BP	GO:0008295	spermidine biosynthetic process	IEP	Predicted GO
MF	GO:0008883	glutamyl-tRNA reductase activity	IEP	Predicted GO
BP	GO:0009309	amine biosynthetic process	IEP	Predicted GO
MF	GO:0015267	channel activity	IEP	Predicted GO
CC	GO:0016020	membrane	IEP	Predicted GO
CC	GO:0016021	integral component of membrane	IEP	Predicted GO
MF	GO:0016829	lyase activity	IEP	Predicted GO
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Predicted GO
MF	GO:0016843	amine-lyase activity	IEP	Predicted GO
MF	GO:0016844	strictosidine synthase activity	IEP	Predicted GO
MF	GO:0022803	passive transmembrane transporter activity	IEP	Predicted GO
MF	GO:0022804	active transmembrane transporter activity	IEP	Predicted GO
MF	GO:0022857	transmembrane transporter activity	IEP	Predicted GO
CC	GO:0031224	intrinsic component of membrane	IEP	Predicted GO
MF	GO:0035299	inositol pentakisphosphate 2-kinase activity	IEP	Predicted GO
BP	GO:0042401	cellular biogenic amine biosynthetic process	IEP	Predicted GO
CC	GO:0044425	membrane part	IEP	Predicted GO
BP	GO:0051179	localization	IEP	Predicted GO
BP	GO:0051234	establishment of localization	IEP	Predicted GO
BP	GO:0055085	transmembrane transport	IEP	Predicted GO
BP	GO:0097164	ammonium ion metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR006694	Fatty_acid_hydroxylase	143	270

External Links

No external refs found!

At5g52570

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation