At5g57990


Description : Ubiquitin carboxyl-terminal hydrolase 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS4]


Gene families : OG_42_0000241 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000241_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g57990
Cluster HCCA clusters: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
Bradi2g20280 No alias ubiquitin-specific protease 25 0.03 Orthogroups_2024-Update
Brara.J01197.1 No alias deubiquitinase *(UBP23) 0.03 Orthogroups_2024-Update
Glyma.13G259700 No alias ubiquitin-specific protease 15 0.03 Orthogroups_2024-Update
MA_10429414g0020 No alias (at4g31670 : 528.0) ubiquitin-specific protease 18... 0.02 Orthogroups_2024-Update
PSME_00012734-RA No alias (at2g24640 : 170.0) ubiquitin-specific protease 19... 0.02 Orthogroups_2024-Update
Potri.018G107500 No alias ubiquitin-specific protease 23 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0016579 protein deubiquitination IEA InterProScan predictions
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA InterProScan predictions
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:0048856 anatomical structure development IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001394 Peptidase_C19_UCH 108 407
No external refs found!