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  5. Solyc03g123530

Solyc03g123530


Description : CCAAT/enhancer-binding zeta (AHRD V3.3 *** A0A0B0MUY0_GOSAR)


Gene families : OG_42_0005575 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005575_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc03g123530
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
405981 No alias CCAAT-binding factor 0.03 Orthogroups_2024-Update
At1g72440 No alias CCAAT-binding factor [Source:UniProtKB/TrEMBL;Acc:F4IDC2] 0.13 Orthogroups_2024-Update
Bradi3g47770 No alias CCAAT-binding factor 0.19 Orthogroups_2024-Update
Brara.G03129.1 No alias component *(NOC1) of ribosomal-subunit proteome nuclear... 0.16 Orthogroups_2024-Update
Cre10.g459600 No alias CCAAT-binding factor 0.05 Orthogroups_2024-Update
Glyma.07G043700 No alias CCAAT-binding factor 0.11 Orthogroups_2024-Update
Glyma.16G012100 No alias CCAAT-binding factor 0.11 Orthogroups_2024-Update
HORVU6Hr1G053890.9 No alias component *(NOC1) of ribosomal-subunit proteome nuclear... 0.03 Orthogroups_2024-Update
Kfl00105_0290 kfl00105_0290_v1.1 (at1g72440 : 437.0) Encodes SLOW WALKER2 (SWA2), a... 0.09 Orthogroups_2024-Update
LOC_Os09g02810 No alias CCAAT/enhancer-binding protein, putative, expressed 0.03 Orthogroups_2024-Update
Mp1g16990.1 No alias component NOC1 of ribosomal subunit nuclear export complex 0.04 Orthogroups_2024-Update
Pp1s8_147V6 No alias ccaat enhancer binding protein zeta 0.08 Orthogroups_2024-Update
Seita.2G178000.1 No alias component *(NOC1) of ribosomal-subunit proteome nuclear... 0.06 Orthogroups_2024-Update
Sobic.001G453400.2 No alias component *(NOC1) of ribosomal-subunit proteome nuclear... 0.08 Orthogroups_2024-Update
Sopen03g041300 No alias CBF/Mak21 family 0.23 Orthogroups_2024-Update
evm.model.tig00021293.22 No alias no hits & (original description: no original description) 0.16 Orthogroups_2024-Update
evm.model.tig00021293.23 No alias (at1g72440 : 137.0) Encodes SLOW WALKER2 (SWA2), a... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR005612 CCAAT-binding_factor 507 747
No external refs found!