1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc04g005680

Solyc04g005680


Description : Ribosomal protein (AHRD V3.3 *** B3TM27_ELAGV)


Gene families : OG_42_0001595 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001595_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g005680
Cluster HCCA clusters: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
157263 No alias Ribosomal protein S4 0.02 Orthogroups_2024-Update
At5g39850 No alias 40S ribosomal protein S9-2... 0.04 Orthogroups_2024-Update
Bradi1g20580 No alias Ribosomal protein S4 0.02 Orthogroups_2024-Update
Brara.B00594.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Brara.C00655.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Brara.J01972.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Cre08.g359750 No alias Ribosomal protein S4 0.04 Orthogroups_2024-Update
Glyma.04G171400 No alias Ribosomal protein S4 0.05 Orthogroups_2024-Update
Glyma.05G028000 No alias Ribosomal protein S4 0.03 Orthogroups_2024-Update
Glyma.06G192500 No alias Ribosomal protein S4 0.03 Orthogroups_2024-Update
Glyma.17G098600 No alias Ribosomal protein S4 0.03 Orthogroups_2024-Update
HORVU2Hr1G028510.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Kfl00038_0240 kfl00038_0240_v1.1 (at5g39850 : 306.0) Ribosomal protein S4; FUNCTIONS IN:... 0.03 Orthogroups_2024-Update
Potri.007G056100 No alias Ribosomal protein S4 0.03 Orthogroups_2024-Update
Pp1s13_410V6 No alias 40s ribosomal protein s9 0.03 Orthogroups_2024-Update
Pp1s14_31V6 No alias 40s ribosomal protein s9 0.02 Orthogroups_2024-Update
Pp1s223_95V6 No alias 40s ribosomal protein s9 0.05 Orthogroups_2024-Update
Seita.3G361100.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Seita.9G384200.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Sobic.002G384700.2 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Sobic.002G385100.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Sobic.008G100000.1 No alias component *(uS4) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Solyc05g007250 No alias 40S ribosomal protein S9, putative (AHRD V3.3 *** Q60CZ2_SOLDE) 0.04 Orthogroups_2024-Update
Sopen01g006230 No alias Ribosomal protein S4/S9 N-terminal domain 0.04 Orthogroups_2024-Update
Sopen04g001730 No alias Ribosomal protein S4/S9 N-terminal domain 0.06 Orthogroups_2024-Update
Sopen05g003210 No alias Ribosomal protein S4/S9 N-terminal domain 0.03 Orthogroups_2024-Update
evm.model.contig_2502.7 No alias (at5g15200 : 244.0) Ribosomal protein S4; FUNCTIONS IN:... 0.03 Orthogroups_2024-Update
evm.model.tig00000826.24 No alias (at5g15200 : 271.0) Ribosomal protein S4; FUNCTIONS IN:... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006366 transcription by RNA polymerase II IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 50 93
No external refs found!