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  5. Solyc04g008460

Solyc04g008460


Description : SET-domain containing protein lysine methyltransferase family protein (AHRD V3.3 --* AT5G43990.9)


Gene families : OG_42_0002052 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g008460
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
270259 No alias Ribosomal protein L23/L15e family protein 0.12 Orthogroups_2024-Update
A4A49_58101 No alias 60s ribosomal protein l15-1 0.15 Orthogroups_2024-Update
At4g16720 No alias Ribosomal protein L15 [Source:UniProtKB/TrEMBL;Acc:A0A178V5T1] 0.06 Orthogroups_2024-Update
At4g17390 No alias 60S ribosomal protein L15-2... 0.03 Orthogroups_2024-Update
Bradi1g27332 No alias Ribosomal protein L23/L15e family protein 0.17 Orthogroups_2024-Update
Bradi3g23072 No alias Ribosomal protein L23/L15e family protein 0.08 Orthogroups_2024-Update
Brara.A01864.1 No alias component *(eL15) of large ribosomal-subunit (LSU) proteome 0.24 Orthogroups_2024-Update
Brara.C04524.1 No alias component *(eL15) of large ribosomal-subunit (LSU) proteome 0.19 Orthogroups_2024-Update
Brara.C04547.1 No alias component *(eL15) of large ribosomal-subunit (LSU) proteome 0.21 Orthogroups_2024-Update
Brara.H00875.1 No alias component *(eL15) of large ribosomal-subunit (LSU) proteome 0.27 Orthogroups_2024-Update
Brara.H00923.1 No alias component *(eL15) of large ribosomal-subunit (LSU) proteome 0.23 Orthogroups_2024-Update
Cre02.g091100 No alias Ribosomal protein L23/L15e family protein 0.24 Orthogroups_2024-Update
GRMZM2G024354 No alias Ribosomal protein L23/L15e family protein 0.07 Orthogroups_2024-Update
Glyma.01G207700 No alias Ribosomal protein L23/L15e family protein 0.13 Orthogroups_2024-Update
Glyma.05G061400 No alias Ribosomal protein L23/L15e family protein 0.17 Orthogroups_2024-Update
Glyma.11G034700 No alias Ribosomal protein L23/L15e family protein 0.15 Orthogroups_2024-Update
Glyma.17G143200 No alias Ribosomal protein L23/L15e family protein 0.14 Orthogroups_2024-Update
HORVU2Hr1G052650.1 No alias component *(eL15) of large ribosomal-subunit (LSU) proteome 0.13 Orthogroups_2024-Update
HORVU5Hr1G048830.1 No alias component *(eL15) of large ribosomal-subunit (LSU) proteome 0.14 Orthogroups_2024-Update
Kfl00064_0230 kfl00064_0230_v1.1 (at4g16720 : 296.0) Ribosomal protein L23/L15e family... 0.1 Orthogroups_2024-Update
LOC_Os03g40180 No alias 60S ribosomal protein L15, putative, expressed 0.06 Orthogroups_2024-Update
MA_19619g0010 No alias (o82528|rl15_pethy : 332.0) 60S ribosomal protein L15 -... 0.13 Orthogroups_2024-Update
Mp1g06500.1 No alias component RPL15 of LSU proteome component 0.11 Orthogroups_2024-Update
Potri.003G078700 No alias Ribosomal protein L23/L15e family protein 0.1 Orthogroups_2024-Update
Pp1s134_151V6 No alias FCAALL.416; 60S ribosomal protein L15 (RPL15A)... 0.2 Orthogroups_2024-Update
Pp1s152_141V6 No alias 60S ribosomal protein L15-1 [Picea mariana] 0.2 Orthogroups_2024-Update
Pp1s28_15V6 No alias 60S ribosomal protein L15-1 [Picea mariana] 0.08 Orthogroups_2024-Update
Pp1s34_445V6 No alias 60S ribosomal protein L15-1 [Picea mariana] 0.14 Orthogroups_2024-Update
Pp1s7_364V6 No alias FCAALL.416; 60S ribosomal protein L15 (RPL15A)... 0.11 Orthogroups_2024-Update
Seita.2G046800.1 No alias component *(eL15) of large ribosomal-subunit (LSU) proteome 0.24 Orthogroups_2024-Update
Seita.2G317300.1 No alias component *(eL15) of large ribosomal-subunit (LSU) proteome 0.19 Orthogroups_2024-Update
Sobic.002G047600.1 No alias component *(eL15) of large ribosomal-subunit (LSU) proteome 0.22 Orthogroups_2024-Update
Sobic.002G304900.1 No alias component *(eL15) of large ribosomal-subunit (LSU) proteome 0.27 Orthogroups_2024-Update
Solyc06g064630 No alias Ribosomal protein L15 (AHRD V3.3 *** K4C793_SOLLC) 0.04 Orthogroups_2024-Update
Sopen04g003610 No alias Ribosomal L15 0.2 Orthogroups_2024-Update
Sopen06g020540 No alias Ribosomal L15 0.2 Orthogroups_2024-Update
Sopen06g023110 No alias Ribosomal L15 0.32 Orthogroups_2024-Update
evm.model.contig_2025.57 No alias (at4g16720 : 267.0) Ribosomal protein L23/L15e family... 0.29 Orthogroups_2024-Update
evm.model.tig00000310.75 No alias (at4g16720 : 256.0) Ribosomal protein L23/L15e family... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!