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Description : Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9T720_RICCO)
Gene families : OG_42_0009566 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009566_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc04g009220 | |
| Cluster | HCCA clusters: Cluster_105 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Potri.005G090600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Sobic.001G451200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sopen04g004350 | No alias | PPR repeat family | 0.06 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000178 | exosome (RNase complex) | IEP | Predicted GO |
| MF | GO:0004143 | diacylglycerol kinase activity | IEP | Predicted GO |
| MF | GO:0005488 | binding | IEP | Predicted GO |
| BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
| BP | GO:0006743 | ubiquinone metabolic process | IEP | Predicted GO |
| BP | GO:0006744 | ubiquinone biosynthetic process | IEP | Predicted GO |
| BP | GO:0007186 | G protein-coupled receptor signaling pathway | IEP | Predicted GO |
| BP | GO:0007205 | protein kinase C-activating G protein-coupled receptor signaling pathway | IEP | Predicted GO |
| MF | GO:0008192 | RNA guanylyltransferase activity | IEP | Predicted GO |
| MF | GO:0008193 | tRNA guanylyltransferase activity | IEP | Predicted GO |
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Predicted GO |
| MF | GO:0016854 | racemase and epimerase activity | IEP | Predicted GO |
| MF | GO:0016855 | racemase and epimerase activity, acting on amino acids and derivatives | IEP | Predicted GO |
| CC | GO:0033588 | Elongator holoenzyme complex | IEP | Predicted GO |
| MF | GO:0034061 | DNA polymerase activity | IEP | Predicted GO |
| MF | GO:0036361 | racemase activity, acting on amino acids and derivatives | IEP | Predicted GO |
| BP | GO:0042180 | cellular ketone metabolic process | IEP | Predicted GO |
| BP | GO:0042181 | ketone biosynthetic process | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| MF | GO:0070568 | guanylyltransferase activity | IEP | Predicted GO |
| BP | GO:1901661 | quinone metabolic process | IEP | Predicted GO |
| BP | GO:1901663 | quinone biosynthetic process | IEP | Predicted GO |
| CC | GO:1905354 | exoribonuclease complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 237 | 266 |
| IPR002885 | Pentatricopeptide_repeat | 410 | 430 |
| IPR002885 | Pentatricopeptide_repeat | 775 | 798 |
| IPR002885 | Pentatricopeptide_repeat | 273 | 300 |
| IPR002885 | Pentatricopeptide_repeat | 455 | 484 |
| IPR002885 | Pentatricopeptide_repeat | 631 | 680 |
| IPR002885 | Pentatricopeptide_repeat | 493 | 540 |
| IPR002885 | Pentatricopeptide_repeat | 306 | 350 |
| IPR002885 | Pentatricopeptide_repeat | 171 | 210 |
| IPR002885 | Pentatricopeptide_repeat | 566 | 610 |
| IPR002885 | Pentatricopeptide_repeat | 701 | 750 |
| No external refs found! |