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  5. Solyc04g009980

Solyc04g009980


Description : LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) (AHRD V3.3 *** AT1G07090.1)


Gene families : OG_42_0000294 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000294_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g009980
Cluster HCCA clusters: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
Brara.D02590.1 No alias plant-specific ALOG-type transcription factor 0.03 Orthogroups_2024-Update
Brara.G00513.1 No alias plant-specific ALOG-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os05g28040 No alias DUF640 domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
Mp2g00330.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.02 Orthogroups_2024-Update
Potri.011G156600 No alias Protein of unknown function (DUF640) 0.03 Orthogroups_2024-Update
Solyc10g008000 No alias LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)... 0.03 Orthogroups_2024-Update
Sopen10g003120 No alias Protein of unknown function (DUF640) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0005244 voltage-gated ion channel activity IEP Predicted GO
MF GO:0005247 voltage-gated chloride channel activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006013 mannose metabolic process IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
BP GO:0006821 chloride transport IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
MF GO:0008308 voltage-gated anion channel activity IEP Predicted GO
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
MF GO:0022832 voltage-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR006936 ALOG_dom 18 134
No external refs found!