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Description : Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103XF42_CYNCS)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc04g051480 | |
| Cluster | HCCA clusters: Cluster_242 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 10002 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| 103939 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| 107304 | No alias | mitochondrial editing factor 22 | 0.02 | Orthogroups_2024-Update | |
| 134446 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| 134551 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| 412514 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.01 | Orthogroups_2024-Update | |
| 94945 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| 96927 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Brara.A02032.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.A03228.1 | No alias | RNA editing factor *(OTP72) | 0.03 | Orthogroups_2024-Update | |
| Brara.J02108.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G020008 | No alias | mitochondrial RNAediting factor 1 | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G060337 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G331779 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G456114 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.10G277600 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.17G117001 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| HORVU7Hr1G030840.1 | No alias | RNA editing factor *(MEF29) | 0.03 | Orthogroups_2024-Update | |
| MA_10277392g0010 | No alias | (at4g18750 : 498.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
| PSME_00010400-RA | No alias | (at4g02750 : 490.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
| PSME_00022325-RA | No alias | (at3g09040 : 700.0) Pentatricopeptide repeat (PPR)... | 0.02 | Orthogroups_2024-Update | |
| PSME_00036890-RA | No alias | (at1g11290 : 679.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
| PSME_00056507-RA | No alias | (at1g16480 : 719.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
| Potri.012G048800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Seita.4G100100.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.9G007900.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.001G347100.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.001G436600.3 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.004G290400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.010G066900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sopen01g006160 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| Sopen01g015270 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen01g033110 | No alias | PPR repeat | 0.05 | Orthogroups_2024-Update | |
| Sopen01g037380 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| Sopen01g038950 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
| Sopen01g052200 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen01g054250 | No alias | PPR repeat family | 0.05 | Orthogroups_2024-Update | |
| Sopen02g025050 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen02g033370 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen02g039140 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update | |
| Sopen03g002990 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen03g011150 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| Sopen03g016890 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update | |
| Sopen03g024500 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| Sopen03g028590 | No alias | PPR repeat family | 0.05 | Orthogroups_2024-Update | |
| Sopen03g038010 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update | |
| Sopen06g035950 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen07g001950 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| Sopen09g004700 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| Sopen09g035030 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen10g004380 | No alias | PPR repeat | 0.06 | Orthogroups_2024-Update | |
| Sopen11g001900 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| Sopen11g001910 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen11g002630 | No alias | PPR repeat family | 0.06 | Orthogroups_2024-Update | |
| Sopen11g009180 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update | |
| Sopen11g026910 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update | |
| Sopen11g029050 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003729 | mRNA binding | IEP | Predicted GO |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Predicted GO |
| MF | GO:0003918 | DNA topoisomerase type II (ATP-hydrolyzing) activity | IEP | Predicted GO |
| CC | GO:0005849 | mRNA cleavage factor complex | IEP | Predicted GO |
| BP | GO:0006265 | DNA topological change | IEP | Predicted GO |
| BP | GO:0006378 | mRNA polyadenylation | IEP | Predicted GO |
| MF | GO:0008094 | DNA-dependent ATPase activity | IEP | Predicted GO |
| MF | GO:0008146 | sulfotransferase activity | IEP | Predicted GO |
| MF | GO:0016782 | transferase activity, transferring sulfur-containing groups | IEP | Predicted GO |
| MF | GO:0016853 | isomerase activity | IEP | Predicted GO |
| MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Predicted GO |
| BP | GO:0031123 | RNA 3'-end processing | IEP | Predicted GO |
| BP | GO:0031124 | mRNA 3'-end processing | IEP | Predicted GO |
| BP | GO:0043631 | RNA polyadenylation | IEP | Predicted GO |
| MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | Predicted GO |
| MF | GO:0061505 | DNA topoisomerase II activity | IEP | Predicted GO |
| BP | GO:0071103 | DNA conformation change | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 607 | 653 |
| IPR002885 | Pentatricopeptide_repeat | 203 | 249 |
| IPR002885 | Pentatricopeptide_repeat | 303 | 351 |
| IPR002885 | Pentatricopeptide_repeat | 675 | 705 |
| IPR002885 | Pentatricopeptide_repeat | 104 | 134 |
| IPR002885 | Pentatricopeptide_repeat | 509 | 536 |
| IPR002885 | Pentatricopeptide_repeat | 276 | 298 |
| IPR002885 | Pentatricopeptide_repeat | 381 | 404 |
| IPR032867 | DYW_dom | 780 | 904 |
| No external refs found! |