Solyc04g071030

Description : U-box domain-containing family protein (AHRD V3.3 *** B9HEI4_POPTR)

Gene families : OG_42_0000112 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc04g071030
Cluster	HCCA clusters: Cluster_99

Target	Alias	Description	ECC score	Gene Family Method
416356	No alias	plant U-box 24	0.02	Orthogroups_2024-Update
426053	No alias	plant U-box 24	0.02	Orthogroups_2024-Update
At1g49780	No alias	U-box domain-containing protein 26...	0.04	Orthogroups_2024-Update
At3g02840	No alias	ARM repeat superfamily protein...	0.03	Orthogroups_2024-Update
At5g09800	No alias	U-box domain-containing protein 28...	0.02	Orthogroups_2024-Update
Bradi3g45200	No alias	plant U-box 23	0.03	Orthogroups_2024-Update
Bradi5g09720	No alias	plant U-box 22	0.02	Orthogroups_2024-Update
Brara.A02878.1	No alias	U-Box-group-III E3 ubiquitin ligase	0.05	Orthogroups_2024-Update
Glyma.14G212200	No alias	CYS, MET, PRO, and GLY protein 1	0.03	Orthogroups_2024-Update
HORVU0Hr1G003810.1	No alias	E3 ubiquitin ligase	0.03	Orthogroups_2024-Update
MA_17715g0010	No alias	"(at1g66160 : 253.0) ""CYS, MET, PRO, and GLY protein...	0.03	Orthogroups_2024-Update
MA_200041g0010	No alias	(at3g19380 : 209.0) plant U-box 25 (PUB25); FUNCTIONS...	0.03	Orthogroups_2024-Update
MA_410546g0010	No alias	(at2g35930 : 239.0) Encodes a cytoplasmically localized...	0.02	Orthogroups_2024-Update
Potri.007G110600	No alias	ARM repeat superfamily protein	0.03	Orthogroups_2024-Update
Potri.009G100200	No alias	plant U-box 26	0.03	Orthogroups_2024-Update
Potri.012G042600	No alias	ARM repeat superfamily protein	0.04	Orthogroups_2024-Update
Potri.014G101100	No alias	plant U-box 23	0.03	Orthogroups_2024-Update
Potri.016G069400	No alias	plant U-box 22	0.03	Orthogroups_2024-Update
Pp1s109_251V6	No alias	u-box domain-containing protein	0.04	Orthogroups_2024-Update
Seita.7G104100.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Sobic.001G441100.1	No alias	E3 ubiquitin ligase	0.03	Orthogroups_2024-Update
Sobic.004G169200.1	No alias	E3 ubiquitin ligase	0.02	Orthogroups_2024-Update
Solyc01g005160	No alias	Avr9/Cf-9 rapidly elicited protein 1	0.03	Orthogroups_2024-Update
Solyc04g008100	No alias	U-box domain-containing protein (AHRD V3.3 *** A0A0A0RAL4_9ROSI)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	InterProScan predictions
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	InterProScan predictions
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000469	cleavage involved in rRNA processing	IEP	Predicted GO
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Predicted GO
BP	GO:0007275	multicellular organism development	IEP	Predicted GO
MF	GO:0008168	methyltransferase activity	IEP	Predicted GO
BP	GO:0009889	regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0010468	regulation of gene expression	IEP	Predicted GO
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0019222	regulation of metabolic process	IEP	Predicted GO
BP	GO:0031323	regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Predicted GO
BP	GO:0032501	multicellular organismal process	IEP	Predicted GO
BP	GO:0032502	developmental process	IEP	Predicted GO
CC	GO:0043226	organelle	IEP	Predicted GO
CC	GO:0043227	membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043229	intracellular organelle	IEP	Predicted GO
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predicted GO
BP	GO:0048856	anatomical structure development	IEP	Predicted GO
BP	GO:0050789	regulation of biological process	IEP	Predicted GO
BP	GO:0050794	regulation of cellular process	IEP	Predicted GO
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0051252	regulation of RNA metabolic process	IEP	Predicted GO
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0065007	biological regulation	IEP	Predicted GO
BP	GO:0080090	regulation of primary metabolic process	IEP	Predicted GO
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	Predicted GO
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	Predicted GO
MF	GO:0140110	transcription regulator activity	IEP	Predicted GO
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Predicted GO
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	13	83

External Links

No external refs found!

Solyc04g071030

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation