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  5. evm.model.tig00000042.11

evm.model.tig00000042.11


Description : (at3g08530 : 1751.0) Clathrin, heavy chain; FUNCTIONS IN: structural molecule activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: plasma membrane, chloroplast, membrane; EXPRESSED IN: guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Clathrin, heavy chain (InterPro:IPR016341), Clathrin, heavy chain, linker/propeller domain (InterPro:IPR016025), Tetratricopeptide-like helical (InterPro:IPR011990), Clathrin, heavy chain, propeller, N-terminal (InterPro:IPR001473), Clathrin, heavy chain, linker, core motif (InterPro:IPR015348), Clathrin, heavy chain, propeller repeat (InterPro:IPR022365), Armadillo-type fold (InterPro:IPR016024), Clathrin, heavy chain/VPS, 7-fold repeat (InterPro:IPR000547); BEST Arabidopsis thaliana protein match is: Clathrin, heavy chain (TAIR:AT3G11130.1); Has 1511 Blast hits to 1401 proteins in 489 species: Archae - 2; Bacteria - 31; Metazoa - 879; Fungi - 167; Plants - 128; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink). & (reliability: 3502.0) & (original description: no original description)


Gene families : OG_42_0001928 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001928_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00000042.11
Cluster HCCA clusters: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
149750 No alias Clathrin, heavy chain 0.03 Orthogroups_2024-Update
88182 No alias Clathrin, heavy chain 0.03 Orthogroups_2024-Update
At3g11130 No alias Clathrin heavy chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNJ6] 0.01 Orthogroups_2024-Update
Bradi4g26877 No alias Clathrin, heavy chain 0.08 Orthogroups_2024-Update
Bradi4g44977 No alias Clathrin, heavy chain 0.07 Orthogroups_2024-Update
Brara.C03244.1 No alias heavy chain of clathrin triskelion 0.02 Orthogroups_2024-Update
Cre02.g101400 No alias Clathrin, heavy chain 0.05 Orthogroups_2024-Update
Glyma.02G258200 No alias Clathrin, heavy chain 0.03 Orthogroups_2024-Update
Glyma.14G058300 No alias Clathrin, heavy chain 0.04 Orthogroups_2024-Update
Glyma.14G195400 No alias Clathrin, heavy chain 0.03 Orthogroups_2024-Update
Glyma.18G026000 No alias Clathrin, heavy chain 0.04 Orthogroups_2024-Update
HORVU4Hr1G024710.12 No alias heavy chain of clathrin triskelion 0.01 Orthogroups_2024-Update
Kfl00232_0230 kfl00232_0230_v1.1 (at3g11130 : 2670.0) Clathrin, heavy chain; FUNCTIONS... 0.04 Orthogroups_2024-Update
LOC_Os11g01380 No alias clathrin heavy chain, putative, expressed 0.02 Orthogroups_2024-Update
Mp6g19660.1 No alias heavy chain of clathrin triskelion 0.01 Orthogroups_2024-Update
PSME_00001090-RA No alias (at3g11130 : 1091.0) Clathrin, heavy chain; FUNCTIONS... 0.02 Orthogroups_2024-Update
Pp1s147_10V6 No alias F9F8.6; clathrin heavy chain, putative [KO:K04646]... 0.03 Orthogroups_2024-Update
Pp1s7_102V6 No alias F9F8.6; clathrin heavy chain, putative [KO:K04646]... 0.03 Orthogroups_2024-Update
Seita.7G333500.1 No alias heavy chain of clathrin triskelion 0.04 Orthogroups_2024-Update
Seita.8G020100.1 No alias heavy chain of clathrin triskelion 0.05 Orthogroups_2024-Update
Sobic.005G003300.1 No alias heavy chain of clathrin triskelion 0.02 Orthogroups_2024-Update
Sobic.008G003700.1 No alias heavy chain of clathrin triskelion 0.04 Orthogroups_2024-Update
Solyc03g096000 No alias Clathrin heavy chain (AHRD V3.3 *** K4BJ22_SOLLC) 0.01 Orthogroups_2024-Update
Sopen05g031050 No alias Region in Clathrin and VPS 0.02 Orthogroups_2024-Update
evm.model.contig_2293.23 No alias (at3g08530 : 1151.0) Clathrin, heavy chain; FUNCTIONS... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA InterProScan predictions
BP GO:0016192 vesicle-mediated transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005801 cis-Golgi network IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0009119 ribonucleoside metabolic process IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0032012 regulation of ARF protein signal transduction IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0042278 purine nucleoside metabolic process IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046128 purine ribonucleoside metabolic process IEP Predicted GO
BP GO:0046578 regulation of Ras protein signal transduction IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
MF GO:0061608 nuclear import signal receptor activity IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
BP GO:1901068 guanosine-containing compound metabolic process IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
InterPro domains Description Start Stop
IPR022365 Clathrin_H-chain_propeller_rpt 307 336
IPR022365 Clathrin_H-chain_propeller_rpt 151 191
IPR000547 Clathrin_H-chain/VPS_repeat 668 806
IPR000547 Clathrin_H-chain/VPS_repeat 1113 1250
IPR000547 Clathrin_H-chain/VPS_repeat 959 1100
IPR000547 Clathrin_H-chain/VPS_repeat 1407 1548
IPR000547 Clathrin_H-chain/VPS_repeat 531 631
IPR000547 Clathrin_H-chain/VPS_repeat 1260 1399
IPR000547 Clathrin_H-chain/VPS_repeat 815 940
No external refs found!