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  5. evm.model.tig00000057.28

evm.model.tig00000057.28


Description : (at5g23110 : 102.0) Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: Transmembrane Fragile-X-F-associated protein (TAIR:AT1G73950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 204.0) & (original description: no original description)


Gene families : OG_42_0003403 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003403_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00000057.28
Cluster HCCA clusters: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
evm.model.tig00000615.1 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!