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  5. Solyc04g078300

Solyc04g078300


Description : MADS-box transcription factor family protein (AHRD V3.3 *** G7ZXM5_MEDTR)


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g078300
Cluster HCCA clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
A4A49_22632 No alias floral homeotic protein agamous 0.03 Orthogroups_2024-Update
Bradi2g26320 No alias AGAMOUS-like 62 0.02 Orthogroups_2024-Update
Brara.B01837.1 No alias regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.02 Orthogroups_2024-Update
GRMZM2G003514 No alias AGAMOUS-like 6 0.03 Orthogroups_2024-Update
Glyma.05G163200 No alias K-box region and MADS-box transcription factor family protein 0.05 Orthogroups_2024-Update
Glyma.09G266400 No alias AGAMOUS-like 6 0.02 Orthogroups_2024-Update
HORVU3Hr1G026650.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os04g23910 No alias OsMADS25 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g32948 No alias OsMADS8 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
Potri.003G119700 No alias AGAMOUS-like 19 0.04 Orthogroups_2024-Update
Potri.004G002400 No alias AGAMOUS-like 62 0.03 Orthogroups_2024-Update
Potri.009G055700 No alias AGAMOUS-like 15 0.04 Orthogroups_2024-Update
Potri.011G075800 No alias K-box region and MADS-box transcription factor family protein 0.04 Orthogroups_2024-Update
Potri.012G125600 No alias K-box region and MADS-box transcription factor family protein 0.04 Orthogroups_2024-Update
Potri.015G134800 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Pp1s209_130V6 No alias mads-box transcription factor 0.02 Orthogroups_2024-Update
Pp1s55_304V6 No alias agamous-like protein 0.02 Orthogroups_2024-Update
Seita.2G002300.1 No alias regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.02 Orthogroups_2024-Update
Seita.9G490400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G258000.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.02 Orthogroups_2024-Update
Sopen01g037760 No alias SRF-type transcription factor (DNA-binding and... 0.04 Orthogroups_2024-Update
Sopen06g020070 No alias SRF-type transcription factor (DNA-binding and... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0009767 photosynthetic electron transport chain IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0016168 chlorophyll binding IEP Predicted GO
BP GO:0019684 photosynthesis, light reaction IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 13 60
No external refs found!