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  5. Solyc04g078470

Solyc04g078470


Description : D-type cyclin-3


Gene families : OG_42_0000136 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000136_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g078470
Cluster HCCA clusters: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
15078 No alias CYCLIN D3;3 0.03 Orthogroups_2024-Update
412774 No alias CYCLIN D1;1 0.02 Orthogroups_2024-Update
Brara.I00217.1 No alias regulatory protein *(CYCD) of cell cycle 0.02 Orthogroups_2024-Update
Brara.I03322.1 No alias regulatory protein *(CYCD) of cell cycle 0.04 Orthogroups_2024-Update
Brara.I04584.1 No alias regulatory protein *(CYCD) of cell cycle 0.03 Orthogroups_2024-Update
Brara.K00959.1 No alias regulatory protein *(CYCD) of cell cycle 0.04 Orthogroups_2024-Update
GRMZM2G133413 No alias cyclin d4;2 0.02 Orthogroups_2024-Update
Glyma.10G263500 No alias CYCLIN D3;1 0.02 Orthogroups_2024-Update
Glyma.13G303000 No alias Cyclin D6;1 0.02 Orthogroups_2024-Update
HORVU7Hr1G033350.3 No alias regulatory protein *(CYCD) of cell cycle 0.03 Orthogroups_2024-Update
MA_17738g0010 No alias (at3g50070 : 241.0) Encode CYCD3;3, a CYCD3 D-type... 0.03 Orthogroups_2024-Update
Potri.007G005700 No alias CYCLIN D1;1 0.02 Orthogroups_2024-Update
Sobic.002G190700.2 No alias regulatory protein *(CYCD) of cell cycle 0.02 Orthogroups_2024-Update
Solyc07g054950 No alias cyclinD6_1 0.03 Orthogroups_2024-Update
evm.model.contig_2077.9 No alias (at1g80370 : 173.0) Cyclin A2;4 (CYCA2;4); CONTAINS... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006366 transcription by RNA polymerase II IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
BP GO:0010498 proteasomal protein catabolic process IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 184 280
IPR006671 Cyclin_N 53 182
No external refs found!