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  5. evm.model.tig00000237.43

evm.model.tig00000237.43


Description : (at3g18860 : 222.0) transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), PLAA family ubiquitin binding, PFU (InterPro:IPR015155), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781), PUL (InterPro:IPR013535); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 46729 Blast hits to 23224 proteins in 745 species: Archae - 52; Bacteria - 6206; Metazoa - 17661; Fungi - 11352; Plants - 5937; Viruses - 0; Other Eukaryotes - 5521 (source: NCBI BLink). & (reliability: 444.0) & (original description: no original description)


Gene families : OG_42_0005730 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005730_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00000237.43
Cluster HCCA clusters: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
At3g18860 No alias AT3g18860/MCB22_3 [Source:UniProtKB/TrEMBL;Acc:Q9LHN3] 0.02 Orthogroups_2024-Update
Sopen01g051540 No alias PUL domain 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR013535 PUL_dom 507 767
IPR001680 WD40_repeat 183 219
IPR001680 WD40_repeat 224 259
IPR001680 WD40_repeat 138 166
IPR001680 WD40_repeat 57 96
IPR001680 WD40_repeat 103 135
IPR001680 WD40_repeat 263 298
No external refs found!