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  5. Solyc04g080530

Solyc04g080530


Description : Pectinesterase (AHRD V3.3 *** K4BVD2_SOLLC)


Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g080530
Cluster HCCA clusters: Cluster_299

Target Alias Description ECC score Gene Family Method Actions
At5g55590 No alias Pectinesterase QRT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FM79] 0.03 Orthogroups_2024-Update
Glyma.02G086850 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G294700 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G032220.4 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
LOC_Os01g53990 No alias pectinesterase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g39760 No alias pectinesterase, putative, expressed 0.04 Orthogroups_2024-Update
Mp1g00190.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Mp5g03920.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Mp5g03930.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
PSME_00022041-RA No alias (at5g55590 : 238.0) Encodes a protein with pectin... 0.03 Orthogroups_2024-Update
Pp1s446_3V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Pp1s45_249V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Pp1s55_167V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Pp1s67_6V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Seita.2G137200.1 No alias pectin methylesterase 0.01 Orthogroups_2024-Update
Seita.3G174200.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Sobic.002G138400.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Solyc12g098340 No alias Pectinesterase (AHRD V3.3 *** K4DHK8_SOLLC) 0.04 Orthogroups_2024-Update
Sopen07g022810 No alias Pectinesterase 0.02 Orthogroups_2024-Update
Sopen07g033560 No alias Pectinesterase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005618 cell wall IEA InterProScan predictions
MF GO:0030599 pectinesterase activity IEA InterProScan predictions
BP GO:0042545 cell wall modification IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003713 transcription coactivator activity IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 42 310
No external refs found!