1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc04g081580

Solyc04g081580


Description : RNA helicase DEAD15


Gene families : OG_42_0007352 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007352_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g081580
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
107914 No alias DEA(D/H)-box RNA helicase family protein 0.05 Orthogroups_2024-Update
Bradi4g07397 No alias DEA(D/H)-box RNA helicase family protein 0.14 Orthogroups_2024-Update
Brara.H00871.1 No alias Unknown function 0.11 Orthogroups_2024-Update
Cre10.g420900 No alias DEA(D/H)-box RNA helicase family protein 0.12 Orthogroups_2024-Update
Glyma.08G313100 No alias DEA(D/H)-box RNA helicase family protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G093160.3 No alias Unknown function 0.05 Orthogroups_2024-Update
Kfl00083_0290 kfl00083_0290_v1.1 (at4g16630 : 610.0) DEA(D/H)-box RNA helicase family... 0.05 Orthogroups_2024-Update
LOC_Os12g29660 No alias DEAD-box ATP-dependent RNA helicase, putative, expressed 0.06 Orthogroups_2024-Update
Potri.005G241300 No alias DEA(D/H)-box RNA helicase family protein 0.06 Orthogroups_2024-Update
Pp1s29_19V6 No alias FCAALL.424; DEAD/DEAH box helicase, putative (RH28)... 0.02 Orthogroups_2024-Update
Seita.3G322400.1 No alias Unknown function 0.15 Orthogroups_2024-Update
Sobic.002G262100.1 No alias Unknown function 0.13 Orthogroups_2024-Update
Sopen04g035190 No alias DEAD/DEAH box helicase 0.2 Orthogroups_2024-Update
evm.model.contig_601.5 No alias (at4g16630 : 453.0) DEA(D/H)-box RNA helicase family... 0.1 Orthogroups_2024-Update
evm.model.tig00000792.35 No alias (at4g16630 : 441.0) DEA(D/H)-box RNA helicase family... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 377 481
IPR011545 DEAD/DEAH_box_helicase_dom 164 335
No external refs found!