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  5. evm.model.tig00000403.5

evm.model.tig00000403.5


Description : (at3g04500 : 127.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition motif-related (InterPro:IPR015464); BEST Arabidopsis thaliana protein match is: oligouridylate binding protein 1B (TAIR:AT1G17370.1); Has 13292 Blast hits to 10995 proteins in 692 species: Archae - 0; Bacteria - 989; Metazoa - 6848; Fungi - 1697; Plants - 2705; Viruses - 0; Other Eukaryotes - 1053 (source: NCBI BLink). & (reliability: 254.0) & (original description: no original description)


Gene families : OG_42_0003045 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003045_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00000403.5
Cluster HCCA clusters: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g40900 No alias RNA recognition motif containing protein, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os08g45240 No alias RNA recognition motif containing protein, putative, expressed 0.01 Orthogroups_2024-Update
MA_10436009g0010 No alias (at3g04500 : 100.0) RNA-binding (RRM/RBD/RNP motifs)... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 148 214
No external refs found!