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  5. Solyc04g082330

Solyc04g082330


Description : pre-rRNA-processing TSR1-like protein (AHRD V3.3 *** AT1G42440.1)


Gene families : OG_42_0006832 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006832_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g082330
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
123319 No alias Function unknown 0.03 Orthogroups_2024-Update
A4A49_08062 No alias hypothetical protein 0.05 Orthogroups_2024-Update
Bradi1g41930 No alias Function unknown 0.05 Orthogroups_2024-Update
Brara.F00342.1 No alias Unknown function 0.12 Orthogroups_2024-Update
Cre16.g673700 No alias Function unknown 0.07 Orthogroups_2024-Update
Glyma.04G018100 No alias Function unknown 0.05 Orthogroups_2024-Update
Kfl00278_0120 kfl00278_0120_v1.1 (at1g42440 : 386.0) FUNCTIONS IN: molecular_function... 0.07 Orthogroups_2024-Update
LOC_Os11g19250 No alias AARP2CN domain containing protein, expressed 0.03 Orthogroups_2024-Update
Mp4g14950.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
Pp1s30_137V6 No alias 20s rrna homolog 0.02 Orthogroups_2024-Update
Seita.3G041200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G249800.1 No alias Unknown function 0.08 Orthogroups_2024-Update
Sopen04g035950 No alias Protein of unknown function (DUF663) 0.19 Orthogroups_2024-Update
evm.model.contig_511.2 No alias (at1g42440 : 249.0) FUNCTIONS IN: molecular_function... 0.07 Orthogroups_2024-Update
evm.model.tig00021357.35 No alias (at1g42440 : 377.0) FUNCTIONS IN: molecular_function... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0042254 ribosome biogenesis IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007034 BMS1_TSR1_C 484 779
IPR012948 AARP2CN 227 306
No external refs found!