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Description : Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103IBH5_CYNCS)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc04g082870 | |
| Cluster | HCCA clusters: Cluster_164 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 31963 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.01 | Orthogroups_2024-Update | |
| At1g31430 | No alias | Pentatricopeptide repeat-containing protein At1g31430... | 0.02 | Orthogroups_2024-Update | |
| At2g27610 | No alias | Pentatricopeptide repeat-containing protein At2g27610... | 0.03 | Orthogroups_2024-Update | |
| At3g13770 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | Orthogroups_2024-Update | |
| At4g13650 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.02 | Orthogroups_2024-Update | |
| Bradi2g42710 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Brara.A02809.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Brara.C03290.1 | No alias | RNA editing factor *(MEF12) | 0.02 | Orthogroups_2024-Update | |
| Brara.C03980.1 | No alias | RNA editing factor *(MEF25) | 0.02 | Orthogroups_2024-Update | |
| Brara.E00324.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Brara.E02152.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Brara.F03378.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.H01226.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.H03084.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G163359 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.05G008800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.05G125500 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.05G244300 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.08G086500 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.08G291800 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.08G294900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.10G190600 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.10G240000 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.11G213300 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.05 | Orthogroups_2024-Update | |
| Glyma.13G220450 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.13G332400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.15G273200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| HORVU4Hr1G014730.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU5Hr1G066010.3 | No alias | RNA editing factor *(OTP87) | 0.02 | Orthogroups_2024-Update | |
| HORVU5Hr1G093530.3 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| HORVU5Hr1G113330.1 | No alias | Unknown function | 0.01 | Orthogroups_2024-Update | |
| HORVU7Hr1G111860.1 | No alias | Unknown function | 0.01 | Orthogroups_2024-Update | |
| LOC_Os12g06070 | No alias | expressed protein | 0.03 | Orthogroups_2024-Update | |
| MA_122899g0010 | No alias | (at3g57430 : 674.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
| MA_20782g0010 | No alias | (at5g13230 : 644.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
| PSME_00001942-RA | No alias | (at3g57430 : 689.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
| PSME_00010400-RA | No alias | (at4g02750 : 490.0) Tetratricopeptide repeat (TPR)-like... | 0.01 | Orthogroups_2024-Update | |
| PSME_00024026-RA | No alias | (at4g20770 : 565.0) Pentatricopeptide repeat (PPR)... | 0.02 | Orthogroups_2024-Update | |
| PSME_00029429-RA | No alias | (at3g13770 : 552.0) Pentatricopeptide repeat (PPR)... | 0.01 | Orthogroups_2024-Update | |
| PSME_00031955-RA | No alias | (at1g11290 : 710.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
| PSME_00036890-RA | No alias | (at1g11290 : 679.0) Pentatricopeptide Repeat Protein... | 0.02 | Orthogroups_2024-Update | |
| PSME_00048766-RA | No alias | (at4g02750 : 577.0) Tetratricopeptide repeat (TPR)-like... | 0.01 | Orthogroups_2024-Update | |
| PSME_00057163-RA | No alias | (at1g11290 : 707.0) Pentatricopeptide Repeat Protein... | 0.02 | Orthogroups_2024-Update | |
| Potri.001G019500 | No alias | SLOW GROWTH 1 | 0.03 | Orthogroups_2024-Update | |
| Potri.001G217600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.001G322100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Potri.003G164900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.006G245300 | No alias | Function unknown | 0.03 | Orthogroups_2024-Update | |
| Potri.012G108000 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.015G138000 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.016G077700 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.017G083900 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Potri.017G091600 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Potri.018G067500 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Seita.3G137300.1 | No alias | RNA editing factor *(ECB2/VAC1) | 0.03 | Orthogroups_2024-Update | |
| Seita.5G065900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.5G385400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.7G164600.1 | No alias | RNA editing factor *(MEF12) | 0.03 | Orthogroups_2024-Update | |
| Seita.7G165500.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.9G341000.1 | No alias | RNA editing factor *(MEF25) | 0.02 | Orthogroups_2024-Update | |
| Sobic.002G111700.6 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.002G200500.3 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.002G358900.3 | No alias | RNA editing factor *(OTP90) | 0.03 | Orthogroups_2024-Update | |
| Sobic.003G433600.1 | No alias | RNA editing factor *(OTP72) | 0.02 | Orthogroups_2024-Update | |
| Sobic.004G217900.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.006G146400.4 | No alias | RNA editing factor *(MEF12) | 0.03 | Orthogroups_2024-Update | |
| Sobic.007G137800.3 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.007G208400.1 | No alias | RNA editing factor *(REME1) | 0.03 | Orthogroups_2024-Update | |
| Sobic.009G116400.4 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.010G190900.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Sopen01g002910 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update | |
| Sopen01g006160 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| Sopen01g032600 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen01g033110 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| Sopen01g041280 | No alias | PPR repeat family | 0.05 | Orthogroups_2024-Update | |
| Sopen01g052200 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update | |
| Sopen02g025050 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen02g033370 | No alias | PPR repeat family | 0.05 | Orthogroups_2024-Update | |
| Sopen03g002990 | No alias | PPR repeat family | 0.05 | Orthogroups_2024-Update | |
| Sopen03g011150 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| Sopen03g016890 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
| Sopen03g024500 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update | |
| Sopen03g028590 | No alias | PPR repeat family | 0.05 | Orthogroups_2024-Update | |
| Sopen04g036510 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update | |
| Sopen05g018650 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen06g022100 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen06g024560 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen06g035950 | No alias | PPR repeat family | 0.05 | Orthogroups_2024-Update | |
| Sopen07g001950 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| Sopen07g026910 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen09g004700 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
| Sopen09g033130 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen09g035030 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen11g001900 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| Sopen11g024970 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen11g026910 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen11g029050 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update | |
| Sopen12g032510 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000226 | microtubule cytoskeleton organization | IEP | Predicted GO |
| CC | GO:0000922 | spindle pole | IEP | Predicted GO |
| MF | GO:0003854 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity | IEP | Predicted GO |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Predicted GO |
| MF | GO:0003918 | DNA topoisomerase type II (ATP-hydrolyzing) activity | IEP | Predicted GO |
| MF | GO:0004143 | diacylglycerol kinase activity | IEP | Predicted GO |
| MF | GO:0004356 | glutamate-ammonia ligase activity | IEP | Predicted GO |
| CC | GO:0005634 | nucleus | IEP | Predicted GO |
| CC | GO:0005815 | microtubule organizing center | IEP | Predicted GO |
| CC | GO:0005856 | cytoskeleton | IEP | Predicted GO |
| CC | GO:0005885 | Arp2/3 protein complex | IEP | Predicted GO |
| BP | GO:0006265 | DNA topological change | IEP | Predicted GO |
| BP | GO:0006298 | mismatch repair | IEP | Predicted GO |
| BP | GO:0006606 | protein import into nucleus | IEP | Predicted GO |
| BP | GO:0006694 | steroid biosynthetic process | IEP | Predicted GO |
| BP | GO:0006886 | intracellular protein transport | IEP | Predicted GO |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | Predicted GO |
| BP | GO:0007015 | actin filament organization | IEP | Predicted GO |
| BP | GO:0007020 | microtubule nucleation | IEP | Predicted GO |
| BP | GO:0007186 | G protein-coupled receptor signaling pathway | IEP | Predicted GO |
| BP | GO:0007205 | protein kinase C-activating G protein-coupled receptor signaling pathway | IEP | Predicted GO |
| BP | GO:0008064 | regulation of actin polymerization or depolymerization | IEP | Predicted GO |
| MF | GO:0008094 | DNA-dependent ATPase activity | IEP | Predicted GO |
| BP | GO:0008154 | actin polymerization or depolymerization | IEP | Predicted GO |
| MF | GO:0008536 | Ran GTPase binding | IEP | Predicted GO |
| MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | Predicted GO |
| BP | GO:0010638 | positive regulation of organelle organization | IEP | Predicted GO |
| MF | GO:0015035 | protein disulfide oxidoreductase activity | IEP | Predicted GO |
| MF | GO:0015036 | disulfide oxidoreductase activity | IEP | Predicted GO |
| CC | GO:0015629 | actin cytoskeleton | IEP | Predicted GO |
| BP | GO:0016043 | cellular component organization | IEP | Predicted GO |
| MF | GO:0016211 | ammonia ligase activity | IEP | Predicted GO |
| MF | GO:0016229 | steroid dehydrogenase activity | IEP | Predicted GO |
| MF | GO:0016667 | oxidoreductase activity, acting on a sulfur group of donors | IEP | Predicted GO |
| MF | GO:0016874 | ligase activity | IEP | Predicted GO |
| MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | Predicted GO |
| MF | GO:0016880 | acid-ammonia (or amide) ligase activity | IEP | Predicted GO |
| BP | GO:0017038 | protein import | IEP | Predicted GO |
| BP | GO:0022607 | cellular component assembly | IEP | Predicted GO |
| BP | GO:0030041 | actin filament polymerization | IEP | Predicted GO |
| BP | GO:0030832 | regulation of actin filament length | IEP | Predicted GO |
| BP | GO:0030833 | regulation of actin filament polymerization | IEP | Predicted GO |
| BP | GO:0030838 | positive regulation of actin filament polymerization | IEP | Predicted GO |
| MF | GO:0030983 | mismatched DNA binding | IEP | Predicted GO |
| BP | GO:0031334 | positive regulation of protein complex assembly | IEP | Predicted GO |
| BP | GO:0032271 | regulation of protein polymerization | IEP | Predicted GO |
| BP | GO:0032273 | positive regulation of protein polymerization | IEP | Predicted GO |
| BP | GO:0032535 | regulation of cellular component size | IEP | Predicted GO |
| BP | GO:0032956 | regulation of actin cytoskeleton organization | IEP | Predicted GO |
| BP | GO:0032970 | regulation of actin filament-based process | IEP | Predicted GO |
| BP | GO:0033043 | regulation of organelle organization | IEP | Predicted GO |
| CC | GO:0033588 | Elongator holoenzyme complex | IEP | Predicted GO |
| MF | GO:0033764 | steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
| BP | GO:0034314 | Arp2/3 complex-mediated actin nucleation | IEP | Predicted GO |
| BP | GO:0034504 | protein localization to nucleus | IEP | Predicted GO |
| BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Predicted GO |
| MF | GO:0043015 | gamma-tubulin binding | IEP | Predicted GO |
| BP | GO:0043254 | regulation of protein complex assembly | IEP | Predicted GO |
| BP | GO:0043933 | protein-containing complex subunit organization | IEP | Predicted GO |
| BP | GO:0044087 | regulation of cellular component biogenesis | IEP | Predicted GO |
| BP | GO:0044089 | positive regulation of cellular component biogenesis | IEP | Predicted GO |
| CC | GO:0044430 | cytoskeletal part | IEP | Predicted GO |
| BP | GO:0045010 | actin nucleation | IEP | Predicted GO |
| BP | GO:0051130 | positive regulation of cellular component organization | IEP | Predicted GO |
| BP | GO:0051169 | nuclear transport | IEP | Predicted GO |
| BP | GO:0051170 | import into nucleus | IEP | Predicted GO |
| BP | GO:0051258 | protein polymerization | IEP | Predicted GO |
| BP | GO:0051493 | regulation of cytoskeleton organization | IEP | Predicted GO |
| BP | GO:0051495 | positive regulation of cytoskeleton organization | IEP | Predicted GO |
| MF | GO:0061505 | DNA topoisomerase II activity | IEP | Predicted GO |
| BP | GO:0065003 | protein-containing complex assembly | IEP | Predicted GO |
| BP | GO:0065008 | regulation of biological quality | IEP | Predicted GO |
| BP | GO:0071103 | DNA conformation change | IEP | Predicted GO |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Predicted GO |
| BP | GO:0090066 | regulation of anatomical structure size | IEP | Predicted GO |
| BP | GO:0097435 | supramolecular fiber organization | IEP | Predicted GO |
| BP | GO:0110053 | regulation of actin filament organization | IEP | Predicted GO |
| BP | GO:1902903 | regulation of supramolecular fiber organization | IEP | Predicted GO |
| BP | GO:1902905 | positive regulation of supramolecular fiber organization | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR032867 | DYW_dom | 670 | 794 |
| IPR002885 | Pentatricopeptide_repeat | 62 | 85 |
| IPR002885 | Pentatricopeptide_repeat | 399 | 428 |
| IPR002885 | Pentatricopeptide_repeat | 94 | 115 |
| IPR002885 | Pentatricopeptide_repeat | 367 | 396 |
| IPR002885 | Pentatricopeptide_repeat | 236 | 263 |
| IPR002885 | Pentatricopeptide_repeat | 337 | 361 |
| IPR002885 | Pentatricopeptide_repeat | 122 | 169 |
| IPR002885 | Pentatricopeptide_repeat | 266 | 311 |
| IPR002885 | Pentatricopeptide_repeat | 497 | 544 |
| No external refs found! |