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  5. evm.model.tig00000691.36

evm.model.tig00000691.36


Description : (at4g18940 : 81.3) RNA ligase/cyclic nucleotide phosphodiesterase family protein; FUNCTIONS IN: cyclic-nucleotide phosphodiesterase activity, catalytic activity; INVOLVED IN: RNA metabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097), 2',3'-cyclic-nucleotide 3'-phosphodiesterase (InterPro:IPR012386); BEST Arabidopsis thaliana protein match is: RNA ligase/cyclic nucleotide phosphodiesterase family protein (TAIR:AT4G18930.1); Has 149 Blast hits to 149 proteins in 25 species: Archae - 3; Bacteria - 10; Metazoa - 0; Fungi - 2; Plants - 56; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink). & (reliability: 162.6) & (original description: no original description)


Gene families : OG_42_0004827 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004827_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00000691.36
Cluster HCCA clusters: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
A4A49_37643 No alias cyclic phosphodiesterase 0.02 Orthogroups_2024-Update
PSME_00031100-RA No alias (at4g18930 : 140.0) RNA ligase/cyclic nucleotide... 0.02 Orthogroups_2024-Update
Sobic.009G199800.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004112 cyclic-nucleotide phosphodiesterase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005319 lipid transporter activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005743 mitochondrial inner membrane IEP Predicted GO
BP GO:0006091 generation of precursor metabolites and energy IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0006869 lipid transport IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
CC GO:0019866 organelle inner membrane IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
CC GO:0070469 respiratory chain IEP Predicted GO
BP GO:0120009 intermembrane lipid transfer IEP Predicted GO
MF GO:0120013 intermembrane lipid transfer activity IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR012386 Cyclic-nucl_3Pdiesterase 1 136
No external refs found!