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  5. Solyc05g007080

Solyc05g007080


Description : Alpha-amylase (AHRD V3.3 *** K4BWN3_SOLLC)


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g007080
Cluster HCCA clusters: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
At5g15110 No alias Pectate lyase family protein [Source:TAIR;Acc:AT5G15110] 0.04 Orthogroups_2024-Update
Glyma.10G277200 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G012200 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
MA_10433252g0010 No alias (at3g24670 : 194.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
MA_97947g0010 No alias (at1g67750 : 510.0) Pectate lyase family protein;... 0.02 Orthogroups_2024-Update
Pp1s173_162V6 No alias pectate lyase 0.05 Orthogroups_2024-Update
Solyc03g113150 No alias Pectate lyase (AHRD V3.3 *** K4BKG8_SOLLC) 0.04 Orthogroups_2024-Update
Sopen05g003050 No alias Pectate lyase 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA InterProScan predictions
MF GO:0004556 alpha-amylase activity IEA InterProScan predictions
MF GO:0005509 calcium ion binding IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000930 gamma-tubulin complex IEP Predicted GO
CC GO:0000931 gamma-tubulin large complex IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
CC GO:0008274 gamma-tubulin ring complex IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
BP GO:0031503 protein-containing complex localization IEP Predicted GO
BP GO:0033566 gamma-tubulin complex localization IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0034629 cellular protein-containing complex localization IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044450 microtubule organizing center part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
InterPro domains Description Start Stop
IPR006047 Glyco_hydro_13_cat_dom 528 781
IPR012850 A-amylase_bs_C 832 890
No external refs found!