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  5. evm.model.tig00000769.38

evm.model.tig00000769.38


Description : (at1g76310 : 252.0) core cell cycle genes; CYCLIN B2;4 (CYCB2;4); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin B2;3 (TAIR:AT1G20610.1); Has 4261 Blast hits to 4252 proteins in 371 species: Archae - 0; Bacteria - 0; Metazoa - 1989; Fungi - 541; Plants - 1112; Viruses - 30; Other Eukaryotes - 589 (source: NCBI BLink). & (p30278|ccnb2_medsa : 231.0) G2/mitotic-specific cyclin-2 (B-like cyclin) (CycMs2) (Fragment) - Medicago sativa (Alfalfa) & (reliability: 464.0) & (original description: no original description)


Gene families : OG_42_0000120 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00000769.38
Cluster HCCA clusters: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
230742 No alias CYCLIN B2;4 0.02 Orthogroups_2024-Update
97411 No alias Cyclin A1;1 0.03 Orthogroups_2024-Update
A4A49_05961 No alias g2mitotic-specific cyclin-1 0.01 Orthogroups_2024-Update
A4A49_12698 No alias cyclin-a1-3 0.03 Orthogroups_2024-Update
A4A49_20167 No alias cyclin-b2-4 0.02 Orthogroups_2024-Update
A4A49_35953 No alias g2mitotic-specific cyclin s13-6 0.03 Orthogroups_2024-Update
A4A49_40931 No alias g2mitotic-specific cyclin s13-6 0.03 Orthogroups_2024-Update
At1g20590 No alias Cyclin-B2-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM91] 0.03 Orthogroups_2024-Update
At1g34460 No alias CYCLIN B1;5 [Source:TAIR;Acc:AT1G34460] 0.02 Orthogroups_2024-Update
At1g44110 No alias CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5] 0.01 Orthogroups_2024-Update
At1g76310 No alias CYCLIN B2;4 [Source:TAIR;Acc:AT1G76310] 0.04 Orthogroups_2024-Update
At2g17620 No alias Cyclin-B2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q39068] 0.02 Orthogroups_2024-Update
At2g26760 No alias CYCB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VPU5] 0.03 Orthogroups_2024-Update
At3g11520 No alias Cyclin-B1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q39069] 0.01 Orthogroups_2024-Update
At4g35620 No alias Cyclin-B2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39070] 0.03 Orthogroups_2024-Update
At4g37490 No alias Cyclin-B1-1 [Source:UniProtKB/Swiss-Prot;Acc:P30183] 0.02 Orthogroups_2024-Update
Brara.B00199.1 No alias regulatory protein *(CYCB) of cell cycle 0.02 Orthogroups_2024-Update
Brara.C00237.1 No alias regulatory protein *(CYCB) of cell cycle 0.04 Orthogroups_2024-Update
Brara.E01810.1 No alias regulatory protein *(CYCA) of cell cycle 0.01 Orthogroups_2024-Update
Brara.E01867.1 No alias regulatory protein *(TAM) involved in metaphase to... 0.04 Orthogroups_2024-Update
Brara.G00692.1 No alias regulatory protein *(CYCB) of cell cycle 0.01 Orthogroups_2024-Update
Cre03.g207900 No alias Cyclin A2;4 0.01 Orthogroups_2024-Update
Glyma.01G159700 No alias Cyclin B2;3 0.03 Orthogroups_2024-Update
Glyma.02G277600 No alias Cyclin family protein 0.05 Orthogroups_2024-Update
Glyma.03G123600 No alias Cyclin family protein 0.05 Orthogroups_2024-Update
Glyma.04G001100 No alias Cyclin B2;3 0.04 Orthogroups_2024-Update
Glyma.04G043600 No alias Cyclin A3;1 0.02 Orthogroups_2024-Update
Glyma.04G071600 No alias mitotic-like cyclin 3B from Arabidopsis 0.05 Orthogroups_2024-Update
Glyma.04G246600 No alias Cyclin A1;1 0.01 Orthogroups_2024-Update
Glyma.06G000600 No alias Cyclin B2;3 0.01 Orthogroups_2024-Update
Glyma.06G043900 No alias CYCLIN A3;4 0.06 Orthogroups_2024-Update
Glyma.06G072900 No alias mitotic-like cyclin 3B from Arabidopsis 0.02 Orthogroups_2024-Update
Glyma.06G116100 No alias Cyclin A1;1 0.04 Orthogroups_2024-Update
Glyma.07G034100 No alias Cyclin A2;4 0.05 Orthogroups_2024-Update
Glyma.08G234900 No alias cyclin b3;1 0.02 Orthogroups_2024-Update
Glyma.11G084500 No alias Cyclin B2;3 0.02 Orthogroups_2024-Update
Glyma.13G031500 No alias Cyclin A1;1 0.02 Orthogroups_2024-Update
Glyma.14G037100 No alias Cyclin family protein 0.07 Orthogroups_2024-Update
Glyma.14G154200 No alias Cyclin A1;1 0.03 Orthogroups_2024-Update
Glyma.19G127200 No alias Cyclin family protein 0.05 Orthogroups_2024-Update
Kfl00560_0010 kfl00560_0010_v1.1 (at1g76310 : 298.0) core cell cycle genes; CYCLIN B2;4... 0.04 Orthogroups_2024-Update
MA_28323g0010 No alias (at5g11300 : 355.0) mitotic-like cyclin, core cell cycle... 0.03 Orthogroups_2024-Update
MA_6619g0010 No alias (at1g44110 : 409.0) Cyclin A1;1 (CYCA1;1); CONTAINS... 0.03 Orthogroups_2024-Update
MA_88982g0010 No alias (at5g11300 : 380.0) mitotic-like cyclin, core cell cycle... 0.03 Orthogroups_2024-Update
Mp5g10030.1 No alias cyclin (CYCB) 0.03 Orthogroups_2024-Update
PSME_00001614-RA No alias (p34800|ccn1_antma : 345.0) G2/mitotic-specific cyclin-1... 0.01 Orthogroups_2024-Update
PSME_00023501-RA No alias (at1g44110 : 356.0) Cyclin A1;1 (CYCA1;1); CONTAINS... 0.01 Orthogroups_2024-Update
PSME_00031546-RA No alias (at1g44110 : 410.0) Cyclin A1;1 (CYCA1;1); CONTAINS... 0.02 Orthogroups_2024-Update
PSME_00044357-RA No alias (at1g76310 : 301.0) core cell cycle genes; CYCLIN B2;4... 0.01 Orthogroups_2024-Update
Pp1s271_10V6 No alias ccb15_orysj ame: full=cyclin-b1-5 ame: full=g2... 0.02 Orthogroups_2024-Update
Pp1s89_130V6 No alias b-like cyclin 0.01 Orthogroups_2024-Update
Solyc01g009040 No alias cyclinB1_4 0.05 Orthogroups_2024-Update
Solyc02g082820 No alias cyclin B2 0.02 Orthogroups_2024-Update
Solyc03g032190 No alias cyclinB2_7 0.05 Orthogroups_2024-Update
Solyc03g120440 No alias cyclin A2_1 0.03 Orthogroups_2024-Update
Solyc04g078310 No alias cyclin A3_1 0.02 Orthogroups_2024-Update
Solyc04g082430 No alias cyclinB2_4 0.05 Orthogroups_2024-Update
Solyc06g065680 No alias cyclin A2 0.06 Orthogroups_2024-Update
Solyc07g066660 No alias cyclinB3_1 0.05 Orthogroups_2024-Update
Solyc10g078330 No alias B-type cyclin 0.05 Orthogroups_2024-Update
Solyc10g080950 No alias cyclinB1_2 0.05 Orthogroups_2024-Update
Solyc11g005090 No alias cyclin A1 0.06 Orthogroups_2024-Update
Solyc12g088470 No alias cyclin A3_4 0.04 Orthogroups_2024-Update
Sopen01g004530 No alias Cyclin, N-terminal domain 0.06 Orthogroups_2024-Update
Sopen02g027620 No alias Cyclin, N-terminal domain 0.02 Orthogroups_2024-Update
Sopen03g006030 No alias Cyclin, N-terminal domain 0.06 Orthogroups_2024-Update
Sopen03g039320 No alias Cyclin, N-terminal domain 0.01 Orthogroups_2024-Update
Sopen04g036020 No alias Cyclin, N-terminal domain 0.06 Orthogroups_2024-Update
Sopen10g028990 No alias Cyclin, N-terminal domain 0.04 Orthogroups_2024-Update
Sopen10g031460 No alias Cyclin, N-terminal domain 0.04 Orthogroups_2024-Update
evm.model.contig_554.3 No alias (q40671|ccnb2_orysa : 240.0) G2/mitotic-specific... 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR006671 Cyclin_N 93 219
IPR004367 Cyclin_C-dom 221 337
No external refs found!