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  5. evm.model.tig00000802.67

evm.model.tig00000802.67


Description : (at3g06010 : 465.0) Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein. AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress.; ATCHR12; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: response to water deprivation, response to salt stress, response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT5G19310.1); Has 23556 Blast hits to 19403 proteins in 2220 species: Archae - 141; Bacteria - 6122; Metazoa - 5759; Fungi - 4503; Plants - 1859; Viruses - 268; Other Eukaryotes - 4904 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 361.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 930.0) & (original description: no original description)


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00000802.67
Cluster HCCA clusters: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
155996 No alias chromatin remodeling factor CHD3 (PICKLE) 0.04 Orthogroups_2024-Update
440815 No alias chromatin remodeling 5 0.05 Orthogroups_2024-Update
At2g25170 No alias chromatin remodeling factor CHD3 (PICKLE)... 0.01 Orthogroups_2024-Update
At3g06400 No alias Chromatin-remodeling complex ATPase... 0.03 Orthogroups_2024-Update
At5g19310 No alias Probable ATP-dependent DNA helicase CHR23... 0.01 Orthogroups_2024-Update
Bradi1g18910 No alias chromatin remodeling 5 0.03 Orthogroups_2024-Update
Bradi1g26940 No alias chromatin remodeling 4 0.03 Orthogroups_2024-Update
Bradi1g44177 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Orthogroups_2024-Update
Bradi1g47367 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Orthogroups_2024-Update
Bradi2g35740 No alias chromatin-remodeling protein 11 0.02 Orthogroups_2024-Update
Brara.A03548.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Cre12.g508150 No alias chromatin-remodeling protein 11 0.02 Orthogroups_2024-Update
GRMZM2G316191 No alias chromatin remodeling 4 0.04 Orthogroups_2024-Update
GRMZM2G387890 No alias P-loop containing nucleoside triphosphate hydrolases... 0.01 Orthogroups_2024-Update
GRMZM2G467799 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update
Glyma.01G175300 No alias chromatin remodeling 1 0.01 Orthogroups_2024-Update
Glyma.02G281000 No alias chromatin remodeling 5 0.02 Orthogroups_2024-Update
Glyma.04G062400 No alias chromatin remodeling factor CHD3 (PICKLE) 0.04 Orthogroups_2024-Update
Glyma.05G131500 No alias chromatin remodeling 4 0.04 Orthogroups_2024-Update
Glyma.06G063400 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Orthogroups_2024-Update
Glyma.07G252100 No alias P-loop containing nucleoside triphosphate hydrolases... 0.01 Orthogroups_2024-Update
Glyma.11G004100 No alias Homeotic gene regulator 0.04 Orthogroups_2024-Update
Glyma.13G215900 No alias chromatin-remodeling protein 11 0.02 Orthogroups_2024-Update
Glyma.17G022300 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
HORVU7Hr1G041450.33 No alias SMARCA component *(SYD/BRM/MINU) 0.03 Orthogroups_2024-Update
Kfl00045_0020 kfl00045_0020_v1.1 (at2g25170 : 947.0) Encodes a SWI/SWF nuclear-localized... 0.02 Orthogroups_2024-Update
Kfl00590_0040 kfl00590_0040_v1.1 (at2g28290 : 922.0) Encodes a SWI2/SNF2-like protein in... 0.02 Orthogroups_2024-Update
LOC_Os03g01200 No alias SNF2 family N-terminal domain containing protein, expressed 0.01 Orthogroups_2024-Update
MA_10429361g0010 No alias (at2g13370 : 1371.0) chromatin remodeling 5 (CHR5);... 0.02 Orthogroups_2024-Update
Mp1g05480.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.02 Orthogroups_2024-Update
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.01 Orthogroups_2024-Update
Mp4g00040.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Orthogroups_2024-Update
PSME_00005765-RA No alias (q7g8y3|isw2_orysa : 1630.0) Probable chromatin... 0.01 Orthogroups_2024-Update
PSME_00006567-RA No alias (at5g44800 : 1157.0) chromatin remodeling 4 (CHR4);... 0.02 Orthogroups_2024-Update
PSME_00015826-RA No alias (at3g06010 : 472.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.02 Orthogroups_2024-Update
Pp1s123_125V6 No alias snf2 super family 0.01 Orthogroups_2024-Update
Pp1s166_101V6 No alias chromodomain helicase dna binding protein 6 0.01 Orthogroups_2024-Update
Pp1s360_40V6 No alias SWI/SNF class chromatin remodeling complex protein 0.01 Orthogroups_2024-Update
Seita.2G320900.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.02 Orthogroups_2024-Update
Seita.3G058900.1 No alias SMARCA component *(SYD/BRM/MINU) 0.01 Orthogroups_2024-Update
Seita.4G050000.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.01 Orthogroups_2024-Update
Seita.4G112400.1 No alias SMARCA component *(SYD/BRM/MINU) 0.01 Orthogroups_2024-Update
Seita.5G166800.1 No alias ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.01 Orthogroups_2024-Update
Sobic.002G308700.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.03 Orthogroups_2024-Update
Sobic.010G065300.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.01 Orthogroups_2024-Update
Sobic.010G105200.1 No alias SMARCA component *(SYD/BRM/MINU) 0.02 Orthogroups_2024-Update
Solyc06g065730 No alias chromatin remodeling factor CHD3 (PICKLE) (AHRD V3.3 ***... 0.01 Orthogroups_2024-Update
Solyc08g029130 No alias chromatin remodeling factor CHD3 (PICKLE) (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Sopen02g017710 No alias SNF2 family N-terminal domain 0.02 Orthogroups_2024-Update
Sopen12g034530 No alias SNF2 family N-terminal domain 0.02 Orthogroups_2024-Update
evm.model.contig_2077.13 No alias (at2g13370 : 595.0) chromatin remodeling 5 (CHR5);... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Predicted GO
CC GO:0000124 SAGA complex IEP Predicted GO
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004181 metallocarboxypeptidase activity IEP Predicted GO
MF GO:0004565 beta-galactosidase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008235 metalloexopeptidase activity IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
CC GO:0009341 beta-galactosidase complex IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0015925 galactosidase activity IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0017069 snRNA binding IEP Predicted GO
MF GO:0017070 U6 snRNA binding IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
MF GO:0030623 U5 snRNA binding IEP Predicted GO
CC GO:0031248 protein acetyltransferase complex IEP Predicted GO
BP GO:0032012 regulation of ARF protein signal transduction IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046578 regulation of Ras protein signal transduction IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
CC GO:0070461 SAGA-type complex IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
CC GO:1902493 acetyltransferase complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 914 966
IPR000330 SNF2_N 634 830
No external refs found!