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  5. evm.model.tig00000842.12

evm.model.tig00000842.12


Description : (at3g56150 : 460.0) member of eIF3c - eukaryotic initiation factor 3c; eukaryotic translation initiation factor 3C (EIF3C); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Proteasome component (PCI) domain (InterPro:IPR000717), Eukaryotic translation initiation factor 3 subunit 8, N-terminal (InterPro:IPR008905); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3 subunit C2 (TAIR:AT3G22860.1). & (q9xhm1|if38_medtr : 454.0) Eukaryotic translation initiation factor 3 subunit 8 (eIF3 p110) (eIF3c) - Medicago truncatula (Barrel medic) & (reliability: 920.0) & (original description: no original description)


Gene families : OG_42_0002950 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002950_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00000842.12
Cluster HCCA clusters: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
At3g56150 No alias Eukaryotic translation initiation factor 3 subunit C... 0.03 Orthogroups_2024-Update
Bradi4g30730 No alias eukaryotic translation initiation factor 3C 0.06 Orthogroups_2024-Update
Bradi4g30780 No alias eukaryotic translation initiation factor 3C 0.03 Orthogroups_2024-Update
Bradi5g12910 No alias eukaryotic translation initiation factor 3C 0.05 Orthogroups_2024-Update
Brara.K01122.1 No alias component *(eIF3c) of eIF3 mRNA-to-PIC binding complex 0.03 Orthogroups_2024-Update
Cre04.g217550 No alias eukaryotic translation initiation factor 3C 0.07 Orthogroups_2024-Update
Glyma.03G206400 No alias eukaryotic translation initiation factor 3C 0.02 Orthogroups_2024-Update
HORVU5Hr1G063770.2 No alias component *(eIF3c) of eIF3 mRNA-to-PIC binding complex 0.02 Orthogroups_2024-Update
Kfl00981_0040 kfl00981_0040_v1.1 (at3g56150 : 833.0) member of eIF3c - eukaryotic... 0.05 Orthogroups_2024-Update
MA_4671g0010 No alias (q9xhm1|if38_medtr : 712.0) Eukaryotic translation... 0.05 Orthogroups_2024-Update
PSME_00050511-RA No alias (q9xhm1|if38_medtr : 1030.0) Eukaryotic translation... 0.01 Orthogroups_2024-Update
Potri.002G016900 No alias eukaryotic translation initiation factor 3C 0.02 Orthogroups_2024-Update
Pp1s140_60V6 No alias eukaryotic translation initiation factor 3 0.01 Orthogroups_2024-Update
Seita.2G253000.1 No alias component *(eIF3c) of eIF3 mRNA-to-PIC binding complex 0.09 Orthogroups_2024-Update
Sopen01g044990 No alias Eukaryotic translation initiation factor 3 subunit 8 N-terminus 0.02 Orthogroups_2024-Update
Sopen06g032550 No alias Eukaryotic translation initiation factor 3 subunit 8 N-terminus 0.01 Orthogroups_2024-Update
evm.model.contig_4420.1 No alias (q9xhm1|if38_medtr : 393.0) Eukaryotic translation... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEA InterProScan predictions
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEA InterProScan predictions
BP GO:0006413 translational initiation IEA InterProScan predictions
MF GO:0031369 translation initiation factor binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
CC GO:0000796 condensin complex IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP Predicted GO
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004819 glutamine-tRNA ligase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006323 DNA packaging IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006555 methionine metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0007076 mitotic chromosome condensation IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030261 chromosome condensation IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR000717 PCI_dom 673 783
IPR008905 EIF3C_N_dom 38 664
No external refs found!